barSeed - Barley Seed Development Database

Probe CUST_14545_PI390587928

Source Contig U35_8799

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14545_PI390587928	Hv_44K_v2	CTTTGGTGAGACACAGAACACCCTTCATTGGGCTGATCGTGCCAAGGAGATAAAAACAAA	1103	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.116	1.240	1.511	0.825	0.316	0.393
Raw	45.753	69.393	84.715	71.522	9.563	12.804

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58522.1	3147	2e-24	2082 - 2141	100	60 / 60	plus	ABC47544
MLOC	MLOC_58522.3	1190	2e-24	258 - 317	100	60 / 60	plus	ABC47544
MLOC	MLOC_58522.2	3025	2e-24	1948 - 2007	100	60 / 60	plus	ABC47544
JLOC1	JLOC1_38035.1	3004	8e-25	1931 - 1990	100	60 / 60	plus
Harvest21	ABC47545	604	3e-25	535 - 594	100	60 / 60	plus
Harvest35	U35_8799	1173	3e-25	1104 - 1163	100	60 / 60	plus

Contig Sequence (1173 bp)

>U35_8799 1173 Hv_44K_v2
AACGTGGCCCACGCCGCCAATGTCATGTCCTGCCCCGTCAAGAAGGGGGCGCCGGCTCTC
CCCGCACTGCAGGCCAGGAAGCTCTCACTTGGAGGAGGCATCGGCGGCAAGCTCAAGGCT
CTAGGGGAGATGGGGGCTGCCAATGCCGATTCAACAGGGAGCCGGATCCTGGTGTTCGTC
AGGCTGCGCCCCATGTCCAGGAAGGAGAAGGAGGCCGGGTCCAACACCTGCGTCAAGATC
GTCAACAAGAAGGACGTGTACCTCACGGAATTGGCCTCAGAGAACGACTACCTCCGCCTG
AAGCGCGTGCGAGGCCGCCATTTCTGCTTCGACGCCTCCTTCCCGGACTCCACGGCGCAG
GCCGAAGTCTATAGCACCTCAACAGCAGATCTTGTGGAAGGTGTTTTGCAAGGGAGGAAT
GGGACCGTGTTCTGCTATGGAGCAACAGGGGCTGGGAAGACCTATACAATGCTGGGGACC
ATGGAAAACCCTGGGGTAATGGTGCTGGCAATCAAGGATTTATTCTTGAAGGTGAGGCAG
AGGAGCTATGATGGCAGCCACTCCATTCAGCTGTCGTACCTTGAGGTCTACAATGAGACA
GTGAGGGACCTGCTATCTCCTGGTAGACCCCTCCTTCTGAGAGAAGACAAGCAGCAGGGA
ACCGTTGCTGCCGGTCTTACACAATATAGAGCATATTCTACAGATGAAGTTATGGAATTA
CTTCAGCAAGGCAACCAGAATAGAACAACTGAACCAACTCGAGTTAATGAGACCTCATCG
CGCTCCCATGCAATACTACAGGTTGTCGTGGAATATAGATACATGGATGGAACTAGTGTT
GTAACACGAGTTGGAAAGCTCTCACTCATTGATCTTGCTGGATCAGAGAGGGCTATAGCA
ACTGACCAACGCTCACAGAGGTCGCTCGAAGGAGCAAACATAAATCGGTCTCTCCTTGCA
CTCAGCAGTTGCATCAATGCTCTTGTGGAGGGGAAGAAGCATGTACCATATCGCAATTCC
AAGCTGACCCAGCTCCTCAAGGATTCTCTTGGGGGGTCCTGCAACACTGTCATGATTGCA
AACATCAGCCCTTCGAATCTTTCCTTTGGTGAGACACAGAACACCCTTCATTGGGCTGAT
CGTGCCAAGGAGATAAAAACAAAGCCATTGACC

Homology of Contig U35_8799 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g42070.1	777	protein\|kinesin motor domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g42970.1	779
Arabidopsis v10	AT1G18550.1	725	ATP binding microtubule motor family protein \| chr1:6381656-6384340 REVERSE LENGTH=725