barSeed - Barley Seed Development Database

Probe CUST_14541_PI390587928

Source Contig U35_13803

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14541_PI390587928	Hv_44K_v2	TACATCACACGTACGGTGACCAGTTAGTTTGATCAATCGATGGTTATGTTTCTTTGTTGG	1203	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_1400.1	931	2e-24	765 - 824	100	60 / 60	plus	ABC01854 ABC01876
JLOC1	JLOC1_864.1	923	8e-25	764 - 823	100	60 / 60	plus
Harvest21	ABC01854	1312	3e-25	1235 - 1294	100	60 / 60	plus	ABC01854
Harvest35	U35_13803	1281	3e-25	1204 - 1263	100	60 / 60	plus

Contig Sequence (1281 bp)

>U35_13803 1281 Hv_44K_v2
TGGCTCCTTCTTCTCCTCTGCTCGCAGCAGCAGTAGCACTGCTGGTGCTGGCCCTTGGTT
CTGCCGTGGCGTATGCGGCGGCAGAGCATGAGGAGCTGAGGTCGAGGCAGCCTCCGATTA
CTCGCGGCCTGTCGTTCGACTTCTACCATGGGAGGTGCCCCGGGGCGGAGTCCATCGTGC
GTAAGTTCGTCCAGGACGCCGTCCGCAAGGACAAAGGCCTCCTCCGCCTCCACTTCCACG
ACTGCTTCGTCCAGGGTGCGACGCGTCGGTGCTCCTGCACGGGTCCGCCGCCGAGCCAGG
GGAACAGCAGGCGCCGCCCAACCTCACGCTCCGCCCCTCCGCCTTGAAGGCCATCGACAA
CATCCGCGACCAGCTGGAGCACCACTGTCACGGCGCCGTCGTCTCCTGCTCCGACATCCT
GGCGCTCGCGCGCGACTCCGTCGTCGCCACGGGCGGCCCGGACTACTGCGTGCCCCTCGG
CCGCCGCGACAGCGCACGGTTCGCCACACGGGACGCAGTGGGCTCCGGCCTCCCGCGGCC
GTCCTCCAACGTGACAACCCTCCTCGACGTGTTCCGCAAGCTCGGCCTCGAAGCCACCGA
CCTCGTCGCGCTCTCCGGCGGCCACACCATCGGGCTGGGACACTGCAACTCCTTCGAGAA
GCGGCTCTTCCCGCTCCCGGATACCACCATGAGCCCTTCCTTCGTCGCCAGGCTAAAGCG
GACGTGCCCGACCATGGGCACCGACGCGCGCGCCGCCTTGGACGTGCGCACCACCAACGT
GTTCGACAACAAATACTTCGTGAACCTGGTGAACCGGGAGGGGCTCTTCGTGTCCGACCA
GGATCTCTACACCAACGCCATCACCCAGCCCATCGTCGAGCACTTCGCGCGCAGCCAAGG
CGACTTCTTCGACCAGTTCGGCGTGTCCATGGTGAAGATGGGCCAGATAAGGGTGCTCAC
CGGCGACCAGGGCCAAGTCCGGCGCCACTGCGCCGTGCCCAACCCCGGCACCGTTGATGG
CGACGACGGCCTTGAGTGGCCGTCTCTCGTGCAGACCGTCGTTGACGCTGCCGCGGAGAA
CCTCGGGTTCTAGAATCTATACTAGTGGAGTGGTAGCTGTTAACCATGCATGTCGAAATA
AATAAAAACTGAGCAGGGCAAAAAAAAAAAAAAAAAAAGCCATGATCGACCAAGCGGTGT
AACTACATCACACGTACGGTGACCAGTTAGTTTGATCAATCGATGGTTATGTTTCTTTGT
TGGNAAAAAAAAAAAAAAAAA

Homology of Contig U35_13803 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g73220.1	359	3e-116	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi3g33940.1	368	3e-124
Arabidopsis v10	AT1G71695.1	358	7e-85	Peroxidase superfamily protein \| chr1:26964359-26966557 FORWARD LENGTH=358