- Probe CUST_1453_PI390587928
- Source Contig U35_30015
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_1453_PI390587928 | Hv_44K_v2 | TCTTACAGCTTTGCTGTCTTGTGTACATGCTCGCCGAATTGGCTTGTTACAAACTTGTTC | 479 | GeneList: yellowgreen MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.221 | 1.861 | 1.685 | 0.985 | 0.365 | 0.377 |
Raw | 390.671 | 934.542 | 714.539 | 675.114 | 83.959 | 97.890 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_12940.1 | 3558 | 2e-24 | 134 - 193 | 100 | 60 / 60 | minus | ABC10694 |
MLOC | MLOC_12940.2 | 3555 | 2e-24 | 134 - 193 | 100 | 60 / 60 | minus | ABC10694 |
Harvest21 | ABC29645 | 539 | 3e-25 | 480 - 539 | 100 | 60 / 60 | plus | |
Harvest35 | U35_30015 | 539 | 3e-25 | 480 - 539 | 100 | 60 / 60 | plus |
Contig Sequence (539 bp)
>U35_30015 539 Hv_44K_v2 GCCGGCCGACGCACTACTACATGCTGAAGAACGCGCACGGCTTCGAGCGCGTGGACCTGC AGAAGCTGGTGTACCGCATGTGTTTCGTGTTCGCGCGCTGCACCAAGCCGGTGTCGCTGA CGGCGCCCATCAAGTACGCCGACATCGCGGCCTACCGTGGCAGGGACTACTACGACAGCA GGATGGCGTCCCTGCAGTACCACCAGGTCCCCGCGGGTCCTCCCCTGTTCAGGGATATGC CCGAGGTGCACGAGGCTCTCAAAGACAGCATGTTCTTCATCTGATGGCGCCTGCTTTTCA GCGTGGTAAGCCCCAATCCAACCCTGCGTTCTGCTTCTTGTCTGCGCCTTCTTGCTGTGT ATGGTGAAGGCCTTTGGCGCTTCTGTTAAGGTACATGTTTGCTGTGTTCAGTACTACAAT GCTCGTCAAATTGACTCTTTACAGCTTTGCTGTGTTCTGTACATGCTCGCCAAATTGGCT CTTACAGCTTTGCTGTCTTGTGTACATGCTCGCCGAATTGGCTTGTTACAAACTTGTTC
Homology of Contig U35_30015 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |