barSeed - Barley Seed Development Database

Probe CUST_14538_PI390587928

Source Contig U35_13806

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14538_PI390587928	Hv_44K_v2	GGAGAAATAACCCCTCTGTGTTATTATATGTATTAATACCCCACTTTATATGTGTTCTCC	554	GeneList: royalblue MasterList: Wall_associated_proteins_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.573	6.671	1.086	0.798	0.395	0.687
Raw	135.084	197.184	26.145	30.873	3.270	10.146

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_26655.1	778	8e-25	457 - 516	100	60 / 60	plus
Harvest21	ABC49098	516	3e-25	392 - 451	100	60 / 60	plus	ABC49098
Harvest21	ABC01054	681	3e-25	555 - 614	100	60 / 60	plus
Harvest21	ABC01026	1094	3e-25	951 - 1010	100	60 / 60	plus
Harvest35	U35_13806	680	3e-25	555 - 614	100	60 / 60	plus
Harvest35	U35_13754	710	3e-25	591 - 650	100	60 / 60	plus

Contig Sequence (680 bp)

>U35_13806 680 Hv_44K_v2
GGTGGAGGAGGAGNCGGCGGCTACCCGGGCCACGGTGGAGGCGGCGGCGGCGGCTACCCA
GGACACGGTGGAGGAGGCGGGGGCGGCTACCCGGGCCACGGTGGAGGAGGAGGAGGCGGC
TACCCCGGCCACGGTGGAGGAGGCGGCGGCGGCTACCCGGGCCACGGCGGAGGAGGCGGC
GGCTACCCAGGTCACGGTGGAGGAGGTGGCGGCGGCTACCCGGGACACGGTGGTAAAGGC
GGTGGCGGCTACCCCGGACACGGCGGAGGCGGCAGTGGATGTCACTGGGGCTGCTGCGGT
CACGGGTACAATGGCTGCCGCTGCTGTGCGCGCGCGGACGAGGTCCCTGAGCCCATGTAC
CGCGCGGAGGTCCGCAACTGAGCGCTCGAGATGCAGCCATACGTGCGTGCGTACAAGGTA
GTACAACTCTACGTGACATTGCTCTGCACAGATACACTTATAGTAAGTTGCAGAGTTGCT
GGTAAATATGGTCTCTGGTAAATAAAGTGCGTACGAGAGCCCGGTTTGCACTTAATTTGC
ACGGCGATGATCTTGGAGAAATAACCCCTCTGTGTTATTATATGTATTAATACCCCACTT
TATATGTGTTCTCCAAGTATGTATTGTGGAATAAAATAACAGAGGAATATATCCAGAGTT
CCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_13806 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None