barSeed - Barley Seed Development Database

Probe CUST_14535_PI390587928

Source Contig U35_13809

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14535_PI390587928	Hv_44K_v2	GTTATTCTTCCTTACGAGTTGCCAAAAGTTGTCCACTTCATCATCTAAGTTTTTCTGAAT	2013	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.354	1.630	1.079	0.795	0.256	0.353
Raw	334.328	621.006	364.357	423.231	48.701	71.376

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_8773.1	1339	1e-22	1195 - 1254	98	59 / 60	plus
Harvest35	U35_13809	2090	3e-25	2014 - 2073	100	60 / 60	plus

Contig Sequence (2090 bp)

>U35_13809 2090 Hv_44K_v2
GGTTCAGTTCATTGTGAACCATGCAACAGTAGAAGCTATTTTCTGTGTGCCTCAAACCCT
AAGCACTCTGCTAAGCTTCCTAACTCAAATGCCATGTGTTCGTCTTATAGTGGTAGTTGG
CGGAGACAATGCAAATACGCCATCTGCAACAGTAGCTGCTGGAGTGGAAATTATAACTTA
CTCCAGTCTACACAGCCAGGGAAAGATGAGCTCTCAAACTTACCGTCCTCCAAAACCTGA
AGATGTTGCCACTATCTGCTACACGAGTGGCACTACTGGCACACCAAAGGGAGCTGTTCT
TTCTCATGAGAACTTAATCGCGAATGTTGCTGGATCAAGCTTGGGCGTTAAATTTTACCC
CTCCGACGTGTATATCTCATATCTACCTTTAGCTCACATCTATGAGAGAGCTAACCAAAT
TGCACTGCTTCACTATGGTGTTGCCATTGGATTTTACCAAGGGGATAATTTGAAGCTGAT
GGATGATTTGGCTGCTTTGAGACCAACAGTATTCGCAAGTGTTCCCCGGCTATATAACAG
AATTTATTCTGCAATCACAAATGCTGTGAAGGATTCTGGTGGGCTAAAAGAAAGATTATT
CCGTACTGCGTACAACGCCAAGAGGCAAGCACTTATGAAAGGACGAAATCCTTCCCCAAT
GTGGGATAAGTTGGTATTTAACAAAATAAAAGCTAGGCTTGGTGGAAGAGTGAGGCTTAT
GACTTCAGGCGCTTCTCCACTGTCAGCAGATGTAATGGAATTCCTAAGAATATGCTTTGG
TGGTGAGGTTCTTGAAGGCTATGGAATGACAGAGACATCTTGTGTCATCACTACAATGGA
TATTGGTGACAAATTAATTGGTCATGTTGGATCACCAAATCCTTCTTGTGAGGTTAAACT
TGTGGATGTCCCAGAAATGAATTACACTTCTGATGATCAACCATATCCTCGTGGAGAAAT
CTGTGTTAGAGGACCTACAATATTCCGCGGTTACTATAAAGACGAAGTCCAAACAAGAGA
TGTCATTGACAATGATGGCTGGTTGCACACTGGAGACATAGGTTTGTGGCTGCCTGGAGG
GCGTCTAAAAATTATAGATAGGAAAAAGAACATTTTCAAGCTGGCTCAAGGAGAATACAT
AGCTCCAGAGAAGATTGAGAATGTGTACGCTAAGTGCAAGTTCATTGCTCAATGCTTTAT
ATATGGTGATAGTTTCAACTCTTTTCTAGTTGCCATTGTAGCAGTTGAACCAGATGTTTT
GAAGGCTTGGGCTGCATCTGAAGGAATACAAAGTGAGGATTTAAGACAGCTTTGTGCTGA
CCCGAGAGCAAAAGCTGCTGTCTTGGCTGACATGGATTCTATTGGAAAGGAAGCACAGCT
AAGAGGTTTTGAATTTGCCAAAGCTGTTACTCTTGTTGCTGAACCATTCACAGTAGAAAA
TGGTCTCCTCACTCCCACGTTTAAGGTCAAAAGACCGCAAGCTAAGGCCTATTTCACGAA
AGAACTCGCAGATATGTATGCACAACTGCGTGCCGCTGAATCAGCTAGGCAGAAGTTGTA
ATTACTCAAGTAATGTTCAGTAGTAAGGTTCAAACCAATACATGACAGGTTCACACAACG
GAGCAAGGATTTCTCATTCGCTCCATGAGCAGGAATACCTTTCACCTGTCAACAGTCTGG
ACTGGTGTTGGGCGTGGTTATTTTGTACTTATAAAGGACGAGTAAATGTGCCCGCGCGTT
GAGAAAAAAAACGTCTAATGATGTCTGAAAAGGCAAAACTCCCATTGAATTCAAAGGAGA
GCTTACTATAGGATGTTATTCAAAAGTAGCACTCAGATTGAAAGACTATGCATGATAGAA
GTACACTGGAAACTACAAATATGTAGGGGTAAGCAACAGGAAGATGGCAAAAAAAGACAT
GTCTTTGTCAGCGCAACATTTCTTCCCTCTGCCTTAGTTATCTCGTCTTTAAGATGTATT
GTTTGATGTCCTCCCTGTGAAGTGCTTCCTCTAGTTATTCTTCCTTACGAGTTGCCAAAA
GTTGTCCACTTCATCATCTAAGTTTTTCTGAATAAAAAAAAAAAAAAAAA

Homology of Contig U35_13809 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os12g04990.1	708	protein\|acyl-CoA synthetase protein, putative, expressed
Brachypodium v1_2	Bradi4g42950.1	714
Arabidopsis v10	AT3G05970.1	701	\| Symbols: LACS6, ATLACS6 \| long-chain acyl-CoA synthetase 6 \| chr3:1786510-1791746 REVERSE LENGTH=701