barSeed - Barley Seed Development Database

Probe CUST_14533_PI390587928

Source Contig U35_13811

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14533_PI390587928	Hv_44K_v2	TATTTTAATAAGTGGTGATGGTTTCATATGTTGTGCTGTTGTTTGGTTTGAAGTTTGGGG	1793	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.732	1.874	1.170	0.801	0.332	0.390
Raw	1185.767	1907.112	1084.960	1137.709	169.617	218.114

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361815	2139	3e-21	1902 - 1961	97	59 / 61	plus	ABC05661
MLOC	AK356192	1861	3e-21	1787 - 1846	97	59 / 61	plus	ABC05661
JLOC1	JLOC1_24627.1	931	2e-21	820 - 879	97	59 / 61	plus
Harvest21	ABC05661	1859	3e-25	1794 - 1853	100	60 / 60	plus	ABC05661
Harvest35	U35_13811	1859	3e-25	1794 - 1853	100	60 / 60	plus

Contig Sequence (1859 bp)

>U35_13811 1859 Hv_44K_v2
ACGCAACTGATACACCTGGATTGCCCCCAACGACGACCTCCCATGGAGAGCGAGCTGCGG
CGGAAGCTAGTTTAGCTCAGCCGCCGACCCAACCTCACCGCGGCCCGCTGCCGAGCTGAG
GACCCCAACCCGCAGATCTGGTGGAGATCGTAGCCAAAGCTGCCGCGAGCCAACCTCTCT
CTGCTCCTCACGACTCTTCCTCCAGCGTCGGCACAGGTCTCCAGCAATGGCAACCTCCTC
TCTTGCTCCGCCTGAGGTGCCCATGGAGCTGCACACAGGCAACCGTGACCGCCTGATAAC
CGCGCTTCGCGCCCACCTCTCCGCCACCGCCAGCCCTCCCCGTGGCCTCGCTCTCCTCCA
GGGTGGCGAGGAGCAGACACGACATTGCACTGATCATCTCGAGCTATTTAGGCAGGAGAG
CTACTTTGCTTATCTTTTTGGAGTGCGCGAGCCAGGGTTCTACGGCGCTATAGACATCGC
CTCTGGACAGTCCATTTTGTTTGCTCCAAGGTTGCCACCTGACTATGCTGTCTGGATGGG
TGAAATAAAACCACTGTCTCATTTTAAGGATAGATACAAGGTCGATTTGGTCTTCTATGT
CGATGAGATTGTGCAGGTTCTGCAAGATCGATTTAGTGAGCATGGGAAGCCTCTTTTGTT
TCTCTTGTATGGAAAGAGTGCTGACAGCGGAAATTACTCAAAGCCTGCTAGTTTTGAAGG
GATAGAGAAGTTTGAAACCGATTTGGGTACGCTCCACCCTATCTTAACTGAATGCCGTGT
TATCAAATCTGAAATGGAGCTTGCCCTCATTCAATATGCTAATGATGTTAGCTCAGAAGC
ACACATTGAGGTTATGAGACAGGCAAAACCAGGCATGAAGGAATATCAGTTAGAAAGCAT
ATTTCTTCATCATTCTTATAGGCATGGAGCCTGTCGACATTGCTCCTACACATGTATATG
CGCTACTGGAGAGAACAGTTCTATTCTTCATTATGGACATACGGCTGCTCCAAATGACCG
GACACTGAATGATGGAGACATGGCTCTAATGGACATGGGAGCTGAATATAATTTCTATGG
CTCTGACATCACATGTTCATACCCCATAAATGGAAAGTTCAACAGCAACCAGACAATAGT
ATACAATGCTGTCCTTAAGGCTCATAATGCTGTCATATCACACATGCAGCCTGGAGTAAA
ATGGATCGATATGCACAAGCTGGCCGAGCAGACAATACTTGAATCTCTCAAGAAAGAAAA
GATTATCCATGGTGATATTGCTGATATGATGGCTCGAAGGTTGGGTGCTGTTTTCATGCC
TCATGGTCTTGGGCACTTGCTTGGAATTGACACCCATGATCCCGGAGGCTACCCTGAGGG
CTTAGAGAGGCCAAATGAGCCAGGACTGAGCTCCTTGCGTACCATAAGAGAACTTAAAGA
AGGGATGGTTATTACGGTTGAGCCAGGCTGTTATTTCATCGATGCTTTGCTGAGGCCTGC
CAGAGATGATCCAATTTCCTCAAAGTTCTTCAACTGGGAAGAGATTGAGAAGTACAAAAG
TTTTGGTGGTGTTCGTATTGAAAGTGATCTGTATGTGACAGGGCAAGGATGCAAGAACCT
GACGAATTGCCCCCGGGAGATCTGGGAAATTGAAGCAGTAATGGCTGGCGCGCCATGGCC
TCCACATGCTGCTGCGACAAAAGCAGAGAACGGACTGCCCAAAGCCTGAGGACTCGCCTG
TTTGATGCTCCCAGGCGAAGCATAACCGTAATAATTGAATGAAGTATAGGATATATTTTA
ATAAGTGGTGATGGTTTCATATGTTGTGCTGTTGTTTGGTTTGAAGTTTGGGGNATAAA

Homology of Contig U35_13811 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g13140.1	507	protein\|xaa-Pro dipeptidase, putative, expressed
Brachypodium v1_2	Bradi3g08420.1	503
Arabidopsis v10	AT4G29490.1	486	Metallopeptidase M24 family protein \| chr4:14487943-14491321 FORWARD LENGTH=486