barSeed - Barley Seed Development Database

Probe CUST_14527_PI390587928

Source Contig U35_13817

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14527_PI390587928	Hv_44K_v2	TGTTTGCCACCCTAAGTAAGTAAGTATATGAACAATCTCAAGCGCCCGTTTGGAACACGG	1506	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	10.154	6.695	1.356	0.647	0.195	0.302
Raw	576.043	623.252	105.751	86.042	8.294	14.705

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK253052.1	1602	2e-24	1527 - 1586	100	60 / 60	plus	ABC01192 ABC01198 ABC50840
MLOC	MLOC_52040.2	2159	2e-24	2062 - 2121	100	60 / 60	plus	ABC01192 ABC01198 ABC50840
JLOC1	JLOC1_33291.2	1564	8e-25	1435 - 1494	100	60 / 60	plus
JLOC1	JLOC1_33291.1	1804	8e-25	1675 - 1734	100	60 / 60	plus
Harvest21	ABC01198	1622	3e-25	1504 - 1563	100	60 / 60	plus	ABC01198
Harvest35	U35_35375	800	3e-25	694 - 753	100	60 / 60	plus
Harvest35	U35_13817	1625	3e-25	1507 - 1566	100	60 / 60	plus

Contig Sequence (1625 bp)

>U35_13817 1625 Hv_44K_v2
CCGGGCTGCAGGAATTCGCCTAGGCGAGGCTGCAATCGCAAGGTGTGTCGAAGAAGAGGG
TAGCATCTGATCTGCTTCCCTTCAGAAACAATGGCGTCTGCTACCCTCCTCAAATCGTCT
TTCCTTCCCAAGAAGGCCGAATGGGGCGCCACGCGCCAGGCCGCCGCTCCCAAGCCGATG
ACCGTCTCCATGGTTGTCCGTGCCAGCGCGTACGCCGATGAGCTTGTGAAAACCGCGAAA
ACCATCGCATCGCCTGGCAGGGGTATCCTTGCCATGGATGAGTCGAATGCTACCTGTGGC
AAGAGACTTGCCTCGATTGGCCTTGAGAACACCGAGGCTAACCGCCAGGCTTACCGGACC
CTCCTTGTCACTCCACCAGGCTTGGGAAACTACATCTCTGGTGCTATCCTCTTTGAGGAG
ACCCTCTACCAGTCGACTGTTGATGGCAAGAAGATTGTTGACATCCTTGTCGAGCAGGGG
ATCGTTCCCGGTATCAAGGTTGACAAGGGTCTTGTGCCACTTGTTGGTTCCAACGATGAG
TCATGGTGCCAAGGCCTCGATGGCCTTGCCTCCCGTGAAGCAGCATACTACCAGCAAGGC
GCCCGCTTCGCCAAGTGGCGCACTGTTGTCAGCATTCCTAACGGACCATCTGAGCTTGCT
GTCAAGGAAGCTGCCTGGGGTCTTGCCCGTTACGCGGCCATCTCACAGGACAATGGGCTG
GTGCCGATTGTGGAGCCTGAGATCATGCTCGATGGTGAGCACGGCATCGAGAGGACCTTC
GAGGTGGCGCAGAAGGTGTGGGCGGAGACCTTTTACTACATGGCCCAGAACAACGTCATG
TTTGAGGGCATCCTCCTGAAGCCAAGCATGGTGACCCCTGGTGCCGAGTGCAAGGACAGG
GCCACCCCTGAGGAAGTAGCCAGCTACACCCTCAAGCTCCTCCAGAGAAGGATCCCCCCT
TCCGTCCCCGGCATCATGTTCTTGTCTGGTGGACAGTCGGAGGTGGAGGCGACGCTGAAC
CTGAACGCGATGAACCAGGCGCCGAACCCGTGGCACGTGTCCTTCTCCTACGCGAGGGCG
CTGCAGAACACCTGCCTCAAGACGTGGGGCGGGCGGCCGGAGAACGTCGCGGCAGCGCAG
GAGGCGCTGCTGCTGCGCGCCAAGGCCAACTCCCTGGCGCAGCTCGGCAAGTACACCAGC
GACGGCGAGGCCGCAGCTGCCAAAGAGAACATGTTCGTCAAGAACTACAGCTACTGATCC
GTCGGCGAGCTGTCCTATCTACATAATCTACCTACGGAGGGAGAGTGCTAGTAGCGCCTT
GAGCAGCTTGAGGGCACCTTAGCCAGCCAGTGTGTCGTCGTTGTTACAGGTCGAGACCAG
CTCTGATGGAAGAGATGGACGGAGAGCATATACTGTGTTTTACCACCCTAAGTAAAAAAA
CTTTGGAATGGTTTTACTGCTGTATTCGCATGTTTTTTTTCTTCTCTAGAGCGTTGTTGT
TGCCTTTGTTTGCCACCCTAAGTAAGTAAGTATATGAACAATCTCAAGCGCCCGTTTGGA
ACACGGAAAAAAAAAAAAAAAAAAATTGATCCATCTGTTTGCTGGAACAAAAAAAAAAAA
AAAAA

Homology of Contig U35_13817 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os11g07020.1	389	protein\|fructose-bisphospate aldolase isozyme, putative, expressed
Brachypodium v1_2	Bradi4g24367.1	389
Arabidopsis v10	AT4G38970.1	398	\| Symbols: FBA2 \| fructose-bisphosphate aldolase 2 \| chr4:18163714-18165659 REVERSE LENGTH=398