- Probe CUST_14525_PI390587928
- Source Contig U35_13819
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14525_PI390587928 | Hv_44K_v2 | TATCTCCAACATCATCCCTGAGATGGAGGTGTGCGACTTCGACTTCGAGCCCTGCGGCTA | 179 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_69140.1 | 2103 | 2e-24 | 1207 - 1266 | 100 | 60 / 60 | plus | ABC00275 ABC00309 ABC00398 ABC00501 ABC00925 ABC01000 ABC34629 ABC37572 ABC37604 ABC37614 ABC47640 |
| JLOC1 | JLOC1_45803.2 | 1855 | 8e-25 | 1197 - 1256 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45803.1 | 2127 | 8e-25 | 1209 - 1268 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00925 | 846 | 3e-25 | 428 - 487 | 100 | 60 / 60 | minus | ABC00925 |
| Harvest21 | ABC00851 | 2008 | 3e-25 | 756 - 815 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC00092 | 2014 | 3e-25 | 1191 - 1250 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13829 | 2028 | 3e-25 | 1203 - 1262 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13819 | 666 | 3e-25 | 180 - 239 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13704 | 793 | 2e-22 | 1 - 55 | 100 | 55 / 55 | plus |
Contig Sequence (666 bp)
>U35_13819 666 Hv_44K_v2 GACCCAGCGAAGCCTGGCCAGAAGTGGCACATCTACTATGCCACTGAGCAACCCGAGCAG CCCATGGTCACCCTGGAGATGTGCATGACTGGGCTTGACAAGAAGAAGGCCTCTGTCTTC TTCAAGACTTCTGCTGATGGCCACGTCTCCTGTGCCAAGGAGATGACCAAGCTCTCTGGT ATCTCCAACATCATCCCTGAGATGGAGGTGTGCGACTTCGACTTCGAGCCCTGCGGCTAC TCCATGAACGCCATCAACGGATCTGCCTTCTCCACCATCCATGTGACCCCCGAGGACGGC TTCAGCTACGCGAGCTATGAGGTCCAGGGCATGGACGCCTCCGCCCTGGTCTACGGCGAC ATCGTCAAGAGGGTTCTCCGGTGCTTCGGCCCTTCAGAGTTCTCTGTGGCGGTCACCATC TTCGGTGGCCGCGGCCACGCCGCCACCTGGGGCAAGAAGCTCGACGCCGAGGCATACGAC TGCAACAACATCGTGGAGCAGGAGCTCCCCTGCGGGGGCGTCCTCATCTACCAGAGCTTT ACCGCGAATGAAGAGGTTGCTGTCTCCGCCGGGTCGCCCAGGTCCGTCTTATCACTCGCA CAGCACCGCGCCCTCTCGCAGAGAATCCTCCTCCGCCCGCCATGCGAGCAGGTTGGCAAG CTTGCC
Homology of Contig U35_13819 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g42090.2 | 399 | 8e-124 | protein|CPuORF7 - conserved peptide uORF-containing transcript, expressed |
| Brachypodium v1_2 | Bradi5g14640.1 | 397 | 2e-133 | |
| Arabidopsis v10 | AT3G25570.1 | 349 | 2e-52 | Adenosylmethionine decarboxylase family protein | chr3:9287413-9288462 REVERSE LENGTH=349 |