barSeed - Barley Seed Development Database

Probe CUST_14522_PI390587928

Source Contig U35_13822

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14522_PI390587928	Hv_44K_v2	CTTGCGTTCCAAAATACTTGTTTAGCTCAAATTTGAACTAAAACCACGACAGCTATTTTG	1288	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.966	2.421	1.232	0.805	0.305	0.439
Raw	118.354	153.945	66.643	69.601	8.273	13.986

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52671.1	1364	2e-24	1289 - 1348	100	60 / 60	plus	ABC05861 ABC41048
JLOC1	JLOC1_33769.1	1533	8e-25	1339 - 1398	100	60 / 60	plus
Harvest35	U35_13822	1365	3e-25	1289 - 1348	100	60 / 60	plus

Contig Sequence (1365 bp)

>U35_13822 1365 Hv_44K_v2
AATCTCTCTCTGACCCTCTCCACCCTTTTCGTTCCTCGCTCCTCCTCCTCGGCGGCCGCC
TCCCCGCAGCCCCTCCCCCAAGCCGCCGCCGCCATGGCCATGAAGGGACCGGGCCTCTTC
ACCGACATCGGCAAGAAGGCCAAGGATCTGCTCACCAGGGACTACACCTACGACCAGAAG
CTCTCCGTCTCCACCGTCAGCTCCTCCGGAGTGGCCGTCACTTCCACAGCTGTGAAGAAA
GGAGGGCTTTATTCTCTTGATGTAGCTTCAGCTTACAAGTATAAGAATACTCTTGTTGAT
GTCAAAGTGGATACAGAATCAAATATCTCTACTACATTGACTGTCTTGGATGTCCTGCCA
TCCACAAAGCTTGTGACGTCTGTCAAGTTTCCTGATTACAATGCTGGAAAGGTGGAGGTG
CAATACTTCCATGACAATGCAACTTTTGCTGCCGCCGTTGGCATGAAGCCCTCTCCTATG
GTTGATTTTTCTGTGGTAGTAGGCCCTAAAGGACTTGCCTTCGGTGGGGAAGCTGGGTTT
GACACTTCTTCAGGAAAGTTTACCAAGTACACTGCTGGTTTCAGTGTAACCAAGCCTGAC
TTCCATGCTTCAGCTATTCTGGCAGACAAAGGTGACACCATCAAAGTGTCAGGTGTGTAT
CACCTTGATGAGAAGCAGAAGGCTTCGGCCGTGGCTGAATTTACCCGGAAGCTCTCAACA
AACGAGAACACACTGACAGTTGGTGGCCTGTACACTGTCGACCCTCAGACAGCTGTGAAG
GCAAGGCTCAACAACACTGGAAAGCTTGCTGCCCTTCTCCAGCACGAGGTTAAACCAAAG
TCACTCTTGACGATATCCGGTGAATTCGACACCAAGGCCTTGGACAGAGCACCCAAGTTT
GGGCTGTCACTTGCGCTCAAGCCCTGATGAGATCATACGTGGATGATGGTGGTTGAACAT
CGGATTCTTTGGTTATTTTTTGTGAAGCTATGGCCAATAATTTGTTCCGCAGACATGTTC
TGTTAAATCTCTGGAGGTTTAGGTGCTCTGTGGGCAGGATCCGATAGGCCTTCACCTGGG
ATTTTATCCAGTCGTTTACTTTTGATGATCATTCATAGATGTATGCAGCTTGTTTCTTTC
TACTGTGAGTTCCGAGTAGCTATCACAGTAGTCTGTTACTTGAAGAAGCTACATTTGATT
TTTCATGCGGTGTTGATTGATTTTACCGCTAGTTGAGATTTACTGCCTGTCAGGATGTCA
ATCCTTTTTTCTTACTTTCTATATACTCCTTGCGTTCCAAAATACTTGTTTAGCTCAAAT
TTGAACTAAAACCACGACAGCTATTTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_13822 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g10510.1	278	8e-150	protein\|outer mitochondrial membrane porin, putative, expressed
Brachypodium v1_2	Bradi1g71020.1	278	2e-161
Arabidopsis v10	AT5G67500.2	303	4e-104	\| Symbols: VDAC2 \| voltage dependent anion channel 2 \| chr5:26935223-26937123 FORWARD LENGTH=303