barSeed - Barley Seed Development Database

Probe CUST_14516_PI390587928

Source Contig U35_13828

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14516_PI390587928	Hv_44K_v2	TATAGTACATAGTACCCAGTGTAGCGCGCGGTACAGGGGAGATGACCACTGGCAATGGCG	92	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68919.1	1978	2e-24	525 - 584	100	60 / 60	plus	None
MLOC	MLOC_68919.2	577	2e-24	229 - 288	100	60 / 60	plus	None
JLOC1	JLOC1_45647.1	1513	8e-25	1326 - 1385	100	60 / 60	minus
JLOC1	JLOC1_45646.1	1611	8e-25	159 - 218	100	60 / 60	plus
Harvest35	U35_13828	484	3e-25	93 - 152	100	60 / 60	plus

Contig Sequence (484 bp)

>U35_13828 484 Hv_44K_v2
ACACTCACCCATCTCCCCTCCCTGTACATACCAAGAGCGCGCGGCAGCGCGAACTTCGAG
CTAGCTTAGCTTAGCTAGCACCAGTGGACGACTATAGTACATAGTACCCAGTGTAGCGCG
CGGTACAGGGGAGATGACCACTGGCAATGGCGGATCTGTCCTGGCGGTGGTCGTCGTCGC
CTGCTTGATCTTCGCCGTCCCTGGCGCCGACGCGCAGCTCAAGGTTGGGTACTACGACGC
GACGTGCCCCGACGCCGAGAGCCTCATCACCACCATCGTCCACGCCTCCGTCCGCATGGA
CGCCGGCAACGGCCCCGGCCTCATCCGCCTCTTCTTCCACGACTGCTTCGTCAGGGGCTG
CGACGCGTCGGTGCTGCTGGACGACCCGACGGGCACGCCGGGAAACCAGACGGTGGAGAA
GACGGCGCCGCCCAACTTCCCCAGCCTCCGGGGCTTCGGGGTCATCGACCGCGCCAAGCG
CGTC

Homology of Contig U35_13828 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None