barSeed - Barley Seed Development Database

Probe CUST_14515_PI390587928

Source Contig U35_13829

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14515_PI390587928	Hv_44K_v2	CTGCGTCTGCCACAATGAGCGTACTGTTTGGAGAAAATCTGTCACAACTTATAAATAAGC	1870	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69140.1	2103	2e-24	1875 - 1934	100	60 / 60	plus	ABC00275 ABC00309 ABC00398 ABC00501 ABC00925 ABC01000 ABC34629 ABC37572 ABC37604 ABC37614 ABC47640
JLOC1	JLOC1_45803.2	1855	8e-25	1605 - 1664	100	60 / 60	plus
JLOC1	JLOC1_45803.1	2127	8e-25	1877 - 1936	100	60 / 60	plus
Harvest21	ABC34629	613	3e-25	87 - 146	100	60 / 60	minus	ABC34629
Harvest21	ABC01000	462	3e-25	349 - 408	100	60 / 60	plus	ABC01000
Harvest21	ABC00851	2008	3e-25	88 - 147	100	60 / 60	minus
Harvest21	ABC00309	625	3e-25	44 - 103	100	60 / 60	minus	ABC00309
Harvest21	ABC00275	567	3e-25	430 - 489	100	60 / 60	plus	ABC00275
Harvest21	ABC00092	2014	3e-25	1859 - 1918	100	60 / 60	plus
Harvest21	ABC47640	503	6e-22	43 - 103	97	59 / 61	minus	ABC47640
Harvest35	U35_38723	613	3e-25	87 - 146	100	60 / 60	minus
Harvest35	U35_13829	2028	3e-25	1871 - 1930	100	60 / 60	plus
Harvest35	U35_13704	793	3e-25	656 - 715	100	60 / 60	plus
Harvest35	U35_48831	463	6e-22	126 - 185	97	58 / 60	minus

Contig Sequence (2028 bp)

>U35_13829 2028 Hv_44K_v2
ACTGGAGCCGCACGCTAACTCGTCGCACAAGAATTTCCTCCCACCCCCCACCGCCTCGCC
GCCGCCACCGCAGCCAGATAAGAAAAGAAGAAGAAAAGAGAGAGAAGGACTCGTCGGGAG
GGCTCGAGATCTGTGTCGGGAGAGGGGGGAATTCTTGAGATCGGAACCGGAACAAGTGGG
CGCGCTCGGGAAGGGGTTACCATACCAATTTTTCCCAGGAACCCTTAGTGAATGTTCTAA
TGGAGTCAAAGGGTGGCAAAAAGTCTAGCAGTAGTAGTTCCCTGATGTACGAAGCTCCCC
TCGGCTACAGCATTGAAGACGTTCGACCAGCTGGAGGCGCAAAGAAGTTTTCTGCTGCAT
ACTCAAACTGCGCGAAGAAGCCATCCTGATATCGTTTTTGGCTTTCCCCTTCCCGTAGTT
TAGGATTTTTATGCAATTTTATTCTGACTCTTTTCTCCCACCAATCTCTCTGGCTTGCTG
CTTCACGATAATCGACCAGTTCTCTAGTCTCTCTCCCTCTGTTCCTCTCTGCTCTGCTTT
CTGACTCAAACTGCAACAATGGCCGCCCCGACCTCTGCGATCGGGTTTGAGGGCTACGAG
AAGCGCCTCGAGATCACCTTCAACGAGGCATCAATCTTTGCTGACCCTCATGGTCGTGGC
CTGCGCGCCCTCTCTAGGGCCCAGATTGACTCTGTTCTTGATCTTGCACGGTGCACCATT
GTGTCCGAGCTCTCCAACAAGGACTTTGACTCGTATGTGCTATCTGAGTCGAGCCTGTTT
ATCTACTCTCAGAAGATTGTGATCAAGACCTGTGGGACTACCATGCTTCTGCTCACCATT
CCAAGGATTCTTGAGCTAGCTGAGGAGCTGTGCATGCCGCTTGCTGCCGTGAAGTACTCC
CGTGGGATGTTCATCTTCCCCGGCGCACAGCCTGCTCCCCACAGGAGCTTCTCTGAGGAG
GTTGATGTCCTGAACAGCTACTTCGGCCACCTGAAGTCTGGTGGCAATGCCTATGTGATT
GGCGACCCAGCGAAGCCTGGCCAGAAGTGGCACATCTACTATGCCACTGAGCAACCCGAG
CAGCCCATGGTCACCCTGGAGATGTGCATGACTGGGCTTGACAAGAAGAAGGCATCTGTC
TTCTTCAAGACTTCTGCTGATGGCCACGTCTCCTGTGCCAAGGAGATGACCAAGCTCTCT
GGTATCTCCAACATCATCCCTGAGATGGAGGTGTGCGACTTCGACTTCGAGCCCTGCGGC
TACTCCATGAACGCCATCAACGGATCTGCCTTCTCCACCATCCATGTGACCCCCGAGGAC
GGCTTCAGCTACGCGAGCTATGAGGTCCAGGGCATGGACGCCTCCGCCCTGGTCTACGGC
GACATCGTCAAGAGGGTCCTCCGGTGCTTCGGCCCTTCAGAGTTCTCTGTGGCGGTCACC
ATCTTCGGTGGCCGCGGCCACGCCGCCACCTGGGGCAAGAAGCTCGACGCCGAGGCATAC
GACTGCAACAACATCGTGGAGCAGGAGCTCCCCTGCGGGGGCGTCCTCATCTACCAGAGC
TTTACCGCGAATGAAGAGGTTGCTGTCTCCGCCGGGTCGCCCAGGTCCGTCTTCCACTGC
TTCGAGGGCGAGAATGTGGAGAGCGGCCACCCTCTGGTCAAGGAAGGCAAGCTTGCCAAC
CTGCTCGCATGGCGGGCGGAGGAGGATTCTCTGGAGGAGGGCGCGGTGCTGTGCGAGTGA
TAAGATGATTTTTGCTGTCGCTGTTCCGTCTGTGGAATTCGTTCTGACTTCCGTTTGTCG
TTTTGGTTACTGTGAAGCAGCCGGCCAGGCTATTGCTACTCTGAATAAACTATTAGCTCT
AGGTGGTTTGCTGCGTCTGCCACAATGAGCGTACTGTTTGGAGAAAATCTGTCACAACTT
ATAAATAAGCATTTTTTTTTATCTAAAAAAAAAAAAAAAAAAACTGCATTCCTTTCTGCT
CAAATAATATTTTAATTCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_13829 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g42090.2	399	0.0	protein\|CPuORF7 - conserved peptide uORF-containing transcript, expressed
Brachypodium v1_2	Bradi5g14640.1	397	0.0
Arabidopsis v10	AT3G25570.1	349	1e-117	Adenosylmethionine decarboxylase family protein \| chr3:9287413-9288462 REVERSE LENGTH=349