- Probe CUST_14514_PI390587928
- Source Contig U35_25802
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14514_PI390587928 | Hv_44K_v2 | ATCATGAACACTCTCCAATGCATTTTGTTCCTGATGGCGCTCATCATGACCCACCAGATA | 34 | GeneList: plum2 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.114 | 0.283 | 1.988 | 3.260 | 1.428 | 1.891 |
| Raw | 20.329 | 76.226 | 497.874 | 1163.368 | 215.683 | 301.626 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_45376.1 | 1588 | 2e-24 | 1503 - 1562 | 100 | 60 / 60 | minus | ABC09782 |
| JLOC1 | JLOC1_29458.1 | 1585 | 8e-25 | 1500 - 1559 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC30089 | 549 | 3e-25 | 35 - 94 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC28912 | 398 | 3e-25 | 10 - 69 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_25802 | 549 | 3e-25 | 35 - 94 | 100 | 60 / 60 | plus |
Contig Sequence (549 bp)
>U35_25802 549 Hv_44K_v2 CCCACACTTAATTAGCACATCAATGGCCATGGCGATCATGAACACTCTCCAATGCATTTT GTTCCTGATGGCGCTCATCATGACCCACCAGATACCGCGTGCCACTGCTGATGCGGACAC CCCAAAAGTCGCCATGGCTAGCTCGGGCGCCGGTTCGAGCTTCCGGCTGGCGGCCCATCA TGACCACGCGCTGAGCCTGAGCGACGACGGCTTCCTCCATGTCCAGAGCCAGCTGGACAA CCTTCTTCCATCGGAGGCGAACGTCACCACCCTCCGCCCACGAGTGGCCTCGCCGCTCGA TATGGCCTTCGGCGTGGTCGTTGGCTTGGGCTCGGGCAAAGGCCGGCATGACTACAACCT CAAGCTCGACGCCTCTGGTAGCCTGACATGGGTGCAATGCAAGCCCTGCAATCCCAAGCA GCCACAGCGCGGCCCCCTGTTCGATCCCAAGGCCTCGTCCACCTTCCAGCAAGTGGCCGG CACGAGCCAGATTTGCCACCCGCCGTACCCCATGGAGCCCGCGGGGCAGCAGTGCGCCTT CCACCTGTC
Homology of Contig U35_25802 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |