barSeed - Barley Seed Development Database

Probe CUST_14505_PI390587928

Source Contig U35_13831

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14505_PI390587928	Hv_44K_v2	CTCAGTTGTTGTGTAGTACTGCTCGTTGTTGTGCAAATCCAGCAAAAAAGTTTCAAAAAA	1186	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.807	1.506	3.085	2.199	0.653	0.541
Raw	2611.340	7790.747	13898.737	15010.317	1635.583	1437.313

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_13831	1259	3e-25	1187 - 1246	100	60 / 60	plus

Contig Sequence (1259 bp)

>U35_13831 1259 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGACCACACGCTCACACCAAAGCCGCCCATCTCGTTCCGTT
CCAGCTCAGGCGAGCCAGCGACCACCGGCCTCCGGCGAGGGCAGCAGCGATGGAGGGCAA
GGAGGAGGACGTGCGCCTCGGGGCGAACAAGTACTCGGAGCGGCAGCCCATCGGCACGGC
GGCGCAGGGGTCCGAGGACAAGGACTACAAGGAGCCCCCGCCGGCGCCGCTGTTCGAGCC
CGGCGAGCTCAAGTCGTGGTCCTTCTACCGCGCCGGCATCGCCGAGTTCATGGCCACCTT
CCTCTTCCTCTACGTCACCATCCTCACCGTCATGGGCTACAGCGGCGCCGCCTCCAAGTG
CGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGCGGCATGATCTTCGCCCTCGT
CTACTGCACCGCCGGCATCTCTGGCGGGCACATCAACCCGGCGGTGACCTTCGGGCTGTT
CCTGGCGAGGAAGCTGTCGCTGACGAGGGCGGTGTTCTACATCATCATGCAGTGCCTGGG
CGCCATCTGCGGCGCCGGCGTGGTCAAGGGGTTCCAGCAGGGCCTGTACATGGGCAACGG
CGGCGGCGCCAACGTGGTGGCGTCCGGCTACACCAAGGGCTCCGGGCTCGGCGCCGAGAT
CATCGGCACCTTCGTCCTCGTCTACACCGTCTTCTCCGCCACCGACGCCAAGAGGAACGC
CAGGGACTCCCACGTTCCCATCCTCGCCCCGCTGCCCATCGGGTTCGCCGTGTTCCTGGT
CCACCTGGCCACCATCCCCATCACCGGCACCGGCATCAACCCGGCGAGGAGCCTCGGCGC
GGCCATCATCTACAACAGGGAGCACGCCTGGTCAGACCACTGGATCTTCTGGGTCGGCCC
CTTCATCGGCGCCGCGCTGGCCGCCATCTACCACCAGGTGGTCATCAGAGCGATCCCATT
CAAGACCAAGTCCTAAGCTGCTGCTACAAAGAAAGATGCCATCCCAACCCGAAGAGCAAA
CTGCGTGTTCTGAGTGAATTTCTTTCTGATGGGGGCGGCCCTCTCTTCCCATCGTCCGTG
TTACCGTGGAATTCCAATTTGTCTTCCAAGTTTGATGTACTACTCTTGCTCTTGCTCTGT
ATTCACCTGAACCCAGACAGAGGACTTGTATGTAATCTCATCAGTGCTCAGTTGTTGTGT
AGTACTGCTCGTTGTTGTGCAAATCCAGCAAAAAAGTTTCAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_13831 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g44630.2	290	0.0	protein\|aquaporin protein, putative, expressed
Brachypodium v1_2	Bradi5g18170.1	289	0.0
Arabidopsis v10	AT4G23400.1	287	9e-178	\| Symbols: PIP1D, PIP1;5 \| plasma membrane intrinsic protein 1;5 \| chr4:12220792-12222155 FORWARD LENGTH=287