barSeed - Barley Seed Development Database

Probe CUST_14504_PI390587928

Source Contig U35_13832

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14504_PI390587928	Hv_44K_v2	GCGTGGCGCTTTCATGGCTTTTCTTCTTCTTCTTCTTTAATTTATTGTGTACAGTACATG	1208	GeneList: lightsteelblue1 MasterList: Pathogenesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	13.982	3.864	1.237	0.817	0.456	0.574
Raw	2246.090	1027.488	282.740	319.592	56.460	79.352

Probe Sequence's BLAST hits in Barley Unigene Datasets

This probe has no hits to the blast databases

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence

Contig Sequence (1596 bp)

>U35_13832 1596 Hv_44K_v2
TTGATCCTAGCTCTCCTCGGGCCCTTTCTTCCTCTCGCTCCTCGCTCCCTAGATTCTTTT
CTAAGATGGGTACTGCCAGCGGTGCCGTGGCCCTGCTGCTGGTGGTGGTGCTGGGAGCTA
GCGTGTCCGGCTCCAGTGGGCAGCTGCAGGTGGGGTTCTACTCCAAGTCGTGCCCCAGCG
CCGAGTCCACCGTCGCGTCCGTCGTCCGAGGAGCCTCCGCCGCCGACTCCACCATCCTCC
CCGCCCTCCTCCGGCTCCAGTTCCACGACTGCTTCGTCAGGGGGTGCGACGCGTCGGTGC
TGATCAAGGGCGGGAACAACAACGCGGAGGTGGACAACGGCAAGCACCAGGGGCTCCGCG
GGATGGACGTGATCGAGAACGCCAAGGCGCAGCTCGAGTCGGTGTGCCCCGGCGTCGTCT
CGTGCGCCGACGTCGTCGTCCTCGCCGCCCGCGACGCCGTCGCATTCACCGGCGGGCCGT
CGTTCGACGTGCCGACGGGGCGGCGCGACGGGAAGGTGTCCAACCTGCGGGACGGCGACG
TGCTGCCGGACGTGCACGACTCCGCCCAGGTGCTCCGCTCCAAGTTCCGCGCAAGCGGCC
TCGACGACAAGGACCTCGTCCTCCTCAGCTCGGCGCACACGGTGGGCACGACGGCGTGCT
TCTTCATCCAGGACCGGCTCTACAACTTCCCGCTCCCGGGCGGCGGGGTCGGGTCGGACC
CGTCGATCCCGGACGGCTTCCTGTCGGAGCTCAAGTCCCGGTGCGCGCCGGGGGACTTCA
ACACGCGCCTGTCGCTGGACCGCGGCAGCGAGCGCGTGTTCGACACCTCGATCCTCCGCA
ACATCCGCAACGGCTTCGCCGTCATCGCCTCCGACGCCGCGCTCTACAACGACACGAGCA
CCGTGGACGTGGTGGACTCTTACTCGGGCCTCCTCAGCACCATCTTCGGGCCCTACTTCC
GGCAGGACTTCGCGGACTCCATGGTGAAGATGGGCAGCATCGGCGTGCTCACCGGCGCCA
ACGGGGAGGTCAGGAAGGTCTGCTCCAAGTTCAACTGAGGCCCATCACCATCACCCATCC
CCGGATCCATATTCCATTCATTGCGCTGCCGGCCGGCCGGAGGACTGGTTGGCAAGCTGG
AGATGAGATGAAAAGCACTAGCCAGCCCATGCATTCGGACATGCATCTCGTGGATGCATG
GCCCCGTCGCGTGGCGCTTTCATGGCTTTTCTTCTTCTTCTTCTTTAATTTATTGTGTAC
AGTACATGTTATTGAAAAGAGAGAGAAGGGGAAATTTAGTGGGTTCATGTGATTCTACCG
CCAAGGTCTAGTACGTACGGTACGGCTGAGGGATTGCAAGCTATAGGAGGATCTGTGCAG
TTTTCTCTTTTGCAGCGGCTCGAAGCGAGATTAAATTCATAGCTAGGGTATAAGATGTGC
TTCTGTATGCTTGTATGTACACTACACACACCATATGTGCAATTAAGTGGAGGTGCAGTC
TATGGTTTTGTAAAAAAAAAAAAAAAAATTGGGTGTTTATCTGCGCCAACTGCAGTTGGA
AATAAGTGTCAGATGTTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_13832 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g10460.1	335	7e-165	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi4g22660.1	332	0.0
Arabidopsis v10	AT4G25980.1	371	2e-100	Peroxidase superfamily protein \| chr4:13189393-13191507 FORWARD LENGTH=371