barSeed - Barley Seed Development Database

Probe CUST_14497_PI390587928

Source Contig U35_21721

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14497_PI390587928	Hv_44K_v2	CCAACTATATATTTTAACACTCTTGGCCTACATTATGTATATGTGCCCGTGAAGATGATA	949	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.538	1.613	1.033	0.755	0.233	0.264
Raw	108.279	178.605	98.140	117.931	11.577	15.140

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12820.1	6095	2e-24	3340 - 3399	100	60 / 60	minus	ABC18244 ABC21269
JLOC1	JLOC1_8618.1	2307	8e-25	2129 - 2188	100	60 / 60	plus
Harvest35	U35_21721	1024	3e-25	950 - 1009	100	60 / 60	plus

Contig Sequence (1024 bp)

>U35_21721 1024 Hv_44K_v2
GGATTTCAGCAGATTCAGTTGGATATGGAATTTCTGAAGAGCTCCCTCAAGGAGTTTATT
GATGATGAAGCAGCTATAAGCTTTCTACTGAAAGAGGTTAGATAGCACCTAACATTGAAT
CACAATCCAAAAAAATTTAGTAGTTTTATCGAGCTTTCCCACACTGTGCCTGCTTGTATN
TAAGGTCTTTACCTAAACACCAAGCGCAAGCATCTGCACACATCACATGTTAATAGATGA
TGGGATCTTCTGTGTGAAAAGAAGCTGTTGCATATTTAGTTTGCTCTTGCGAACCTGTCT
CTGGAATATGTTTGAACATTGTTTATTTCCCCCTCCTTTGCAGGTGAACAATGCTGCACA
TGAGAGATGTCTTGACCCGATACCTCTTGAGGCCCCAATATTAGATAAGCTCATAAATGC
AAAACTGGCAAAAATCAAAGAGCAAAGCTCAAATATGTAGTCACATTGTATCTCTCAGCA
GCATTCAGTTTTACTCAATTTTAATACACACCATTCAAAGCTATGTGCATATAGTTGTGT
GGGCTTGTGGCATGCCACCATCTGTAATGTGTAAATCTGAGGTCAAAACACTCGAATTGA
ATCAACAGTGCCGGAAATGTATACTTCTTGAGCTCTCAGCGTCCCATCTCTGCCATTGTA
TTGTCACGCGTCTTGACTCTAGAGTTGAGTTGAATATTATGCATTTTAATCGAATGGACG
TTTACAAGCTGTAGAGTGCAGAAAAAAGATGCAATACTTTGAGGGCGCAGTTCGTGGAGA
AATTACGAGCCTGGTCACTATGATTATTACCGAAGTCCCATCCACTTGACAATCCTCTCC
TTTTTGGAATGAACTAATATATGGATTCAGATTGGAATTTTGCATGTCTGGATTGTGGTT
TTTGTTGTACGTTGCGGATTGTTGCTTACACTTGTATCATTTGTGTTTCCCAACTATATA
TTTTAACACTCTTGGCCTACATTATGTATATGTGCCCGTGAAGATGATAAAAAAAAAAAA
AAAA

Homology of Contig U35_21721 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None