barSeed - Barley Seed Development Database

Probe CUST_14495_PI390587928

Source Contig U35_21723

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14495_PI390587928	Hv_44K_v2	GTAGTAGGCAATATGACTATTTGACTATTTCTTCACAGAGTGCTTTTGCATGATGAAGAA	737	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52096.6	3493	2e-24	20 - 79	100	60 / 60	minus	ABC18874
MLOC	MLOC_52096.7	3606	2e-24	20 - 79	100	60 / 60	minus	ABC18874
MLOC	MLOC_52096.3	3533	2e-24	239 - 298	100	60 / 60	minus	ABC18874
MLOC	MLOC_52096.2	3617	2e-24	240 - 299	100	60 / 60	minus	ABC18874
JLOC1	JLOC1_33334.5	3551	8e-25	3250 - 3309	100	60 / 60	plus
JLOC1	JLOC1_33334.4	3617	8e-25	3316 - 3375	100	60 / 60	plus
JLOC1	JLOC1_33334.2	3384	8e-25	3083 - 3142	100	60 / 60	plus
Harvest21	ABC18874	875	3e-25	738 - 797	100	60 / 60	plus	ABC18874
Harvest35	U35_21723	875	3e-25	738 - 797	100	60 / 60	plus

Contig Sequence (875 bp)

>U35_21723 875 Hv_44K_v2
GCTTGTTACAAACTAGTTTTCCAGCAGCTGTGCTCTATCATGGATCAGTAACAGATTTTG
ATTCTCGCTTATATGGGTTTGACATTGGCACCTGTCTTGAGGTGATTGAGCATGTGGAGG
AGGACCAAGCAAGTTTATTTGGCAACGTTGTATTGAGTTCATTCTGTCCGGCCGTGCTCA
TTGTCTCCACACCCAACTACGAATACAACCCTATCCTCCAGAGGTCAGCTATGCCAAACA
AGGAAGAGCAGCAGGAAGAAAATGCTGGACCTTGCAAGTTCCGCAACCATGATCACAAGT
TTGAGTGGACACGGTCCCAGTTCCAGCGGTGGGCTACTGGCCTCGCTGCAAGCCACAACT
ACAGTGTGGAGTTCAGTGGTGTTGGCGGCTCGAGCGACGAACCTGGTTATGCTTCCCAGA
TTGCTGTTTTCAGAAGAATGGCGACAGATCAAGGCGGATCTTCCCCGATCGAGAATGATT
CGCATCAACCTTATGAAGTTCTCTGGGAATGGCCTAACGCATCTATACCTCTGACTGAGT
TTGGGCGGAGGTAATATTACCTGACTCACCGTCCTCGTACCCGAGATGATGAGACTGGTT
CTTACTAACTTGTCAGTTTGATAGTCCACCCAGAGTGTGTTGCTGGATATCTACCGCGTT
GAACTAAATAGTTGCAGTAGCTGCTCGAAACCTATCCCTTGCGATGGCTCCAATGCCTGT
AGAGAGCTGAATATTCTGTAGTAGGCAATATGACTATTTGACTATTTCTTCACAGAGTGC
TTTTGCATGATGAAGAAGAGTAGCCATGGCGCCTCCTTAAACAAAAGGAGGATGCCTGGC
ATCGGAGGCTTCGATCGCCCCCCAGCCGTCCAGGG

Homology of Contig U35_21723 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g06970.1	927	4e-96	protein\|HEN1, putative, expressed
Brachypodium v1_2	Bradi1g56760.1	918	2e-101
Arabidopsis v10	AT4G20910.1	942	5e-59	\| Symbols: HEN1, CRM2 \| double-stranded RNA binding protein-related / DsRBD protein-related \| chr4:11186264-11190575 REVERSE LENGTH=942