- Probe CUST_14491_PI390587928
- Source Contig U35_21727
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14491_PI390587928 | Hv_44K_v2 | GATGCATGTGCTACAGAAACTGCACCATTGAATCCATGTAGTCATATCTGTGACATCTTC | 262 | GeneList: darkgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.671 | 3.109 | 4.847 | 3.327 | 0.085 | 0.025 |
| Raw | 167.100 | 1292.275 | 1691.433 | 1860.535 | 15.188 | 3.300 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_46629.1 | 365 | 1e-22 | 287 - 345 | 98 | 58 / 59 | plus | |
| Harvest21 | ABC15989 | 405 | 3e-25 | 263 - 322 | 100 | 60 / 60 | plus | ABC15989 |
| Harvest35 | U35_21727 | 405 | 3e-25 | 263 - 322 | 100 | 60 / 60 | plus |
Contig Sequence (405 bp)
>U35_21727 405 Hv_44K_v2 CTACCCCATCCATCGCTAGCTATGGCATGGTGCATGAAGAACATTGGCAAAGGACTATTG GGAACCAACAATGTGTTGATATGCTTGTGGGCCTTGTTGCTGGTGACGCTGCTTGTCTTG TCATCTGAAGAGATGGGTTCGGATGCATGTGATCAAGATTGGAGCCAGACATGGGACAAC AGCTCATGTATCATTCGCGGCACATGCAACAAGCCCTGCAGAAGAGAGAACTTTGACAGC GGCATCTGCAAAAAACTCTTTAGATGCATGTGCTACAGAAACTGCACCATTGAATCCATG TAGTCATATCTGTGACATCTTCATGCATGCTCGATCGAAGCTATTTCTATGAGTTCATGC ATTATGAATGAAATTAATTAATTAATTTAAAAAAAAAAAAAAAAA
Homology of Contig U35_21727 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |