barSeed - Barley Seed Development Database

Probe CUST_14484_PI390587928

Source Contig U35_19414

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14484_PI390587928	Hv_44K_v2	GTTTGGGTATGTGTATCTCTTGACTTTAACGCAGAAAGGTTGACCCAAGAGATTGTGAAA	1180	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.880	1.522	0.905	0.857	0.544	0.676
Raw	26.694	31.310	18.212	27.008	5.592	7.816

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_19414	1280	3e-25	1181 - 1240	100	60 / 60	plus

Contig Sequence (1280 bp)

>U35_19414 1280 Hv_44K_v2
GTCTCCTCTTCACATCCATCAGCTTTGGCATCTGCTAGCAAAAAAATAAGCTCCACATTT
CCTCGCAAGCAACATAGAGAAAGAAGAAAAGAAGACCACTCTGCACTCCTCCATCGAAGC
TCGTCGCCTTGGTGGCAAGAGGTGACGTATTAACTACACCTGCATCACCATGGTCTTTGC
CGTGGATGCCGCGCTGTGGGTGGTGGGCAAGGCGCTGGCCCCCGTCACGGACGGACTGCT
GGAGTCATGGGCAGCCAGCACGAAGCTTGGCCGCAACATCAACGCCCTCAAGATGCAACT
CCTCTACGCACAAGGGATGCTCAACAACGCGCAGGGTAGGGAGATCCGCAACCCTGCTCT
CAAGGAGCTTCTGCAGAAGCTGCGGGAGCTGGCGTACGGTGCCGACGACGCGCTCGACGA
GCTCGACTACTTCCGCATCCAGGACGAGCTCGATGGCACATACCATGCCGCCGATTTGGA
TGCCCAGAGCTGCGTTGACAGGCTAGTCATCAATGCTCGGCACACTGCCAAGGCTGCAGG
CAATAAACTCAAGTGCTCGTCATCCTCTACCCGTGCTTATCCCGACGATCAGGAAGATGG
TGGCACACGAGGATGCCTCTCTGTCGTTGGCTCGTGTGGTGGGCGTGATATCAGCTCCTC
ACCACTGCGACCCACCACCCAGGGAGTCCAGGAGGTTGACGGCGGATGCATGCCTGAAGT
CTTCTCTTGTGCTCGCAACGCTGCACAAACTATCGGGAGTGGGCGACGATTCCTCTGTAG
CGCCTGGCCATCAAAGATGCTACAAGAAAATAACACCATGCAAACACCAAAACTGAAGTT
TGATCGGGTCGTAATGTCTAAAAAAATACTGGAAATTATAGAGCAGTTGAAACCTCTGTG
TGCTATGGTTTCCACCATTCTCAATCTAGAACTACTTGGCTCCACCCATATCCCCCCTGC
CCAAGACATTACGAACCGACCCAAAACCACACCAAATATTATAGAGCCTGCGTTGTATGG
GAGGAATGACCTGAAAAAGAACATCATTGATGGAATCACGCATGGTAAATATTGTACCAA
TGAACTCACCGTAGTTCCACTTGTTGGTCCAGGAGGTATTGGGAAGACAACACTCACGCA
ACACATATTTAGAGAACTGGAGGGTTCTTTCCAAGTTTCAGTTTGGGTATGTGTATCTCT
TGACTTTAACGCAGAAAGGTTGACCCAAGAGATTGTGAAAAAAATCCCTAAAGTGAATGG
TGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_19414 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g53496.1	1808	4e-98	protein\|NBS-LRR disease resistance protein, putative, expressed
Brachypodium v1_2	Bradi2g36030.1	1382	2e-125
Arabidopsis v10	None