barSeed - Barley Seed Development Database

Probe CUST_14481_PI390587928

Source Contig U35_19417

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14481_PI390587928	Hv_44K_v2	TGACTGTGTGACCTGGAGAGTTTTGTCTTAGATGAAATTGATGGATATTTATCATTGTGA	2114	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.435	0.771	1.784	1.813	1.013	0.968
Raw	2376.083	6632.613	13266.357	20443.323	4160.800	4291.110

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72532.1	2946	2e-24	26 - 85	100	60 / 60	minus	ABC12019
JLOC1	JLOC1_48240.2	3018	8e-25	2862 - 2921	100	60 / 60	plus
JLOC1	JLOC1_48240.1	3000	8e-25	2844 - 2903	100	60 / 60	plus
Harvest21	ABC12019	1435	3e-25	1371 - 1430	100	60 / 60	plus	ABC12019
Harvest21	ABC46236	324	1e-23	15 - 74	98	59 / 60	minus
Harvest35	U35_19417	2226	3e-25	2115 - 2174	100	60 / 60	plus

Contig Sequence (2226 bp)

>U35_19417 2226 Hv_44K_v2
GAAAGTAACACGGGTTGCAGCGTTTCCTATTGGGATAGACTCTGAGCGTTTCAAAAGAGC
GTTGGATATTGCAGCAGTAAGAAGACATGTCACTGAATTGACACAGCGATTTGCAGGGCG
GAAGGTAATGCTTGGTGTTGATCGACTTGACATGATCAAAGGAATTCCACAAAAGATTTT
GGCCTTTGAAAAATTTCTTGAGGAAAACCCTGAATGGAATGATAAAGTCGTTCTACTTCA
AATTGCCGTACCAACTAGAACAGATGTCCCTGAGTATCAGAAGCTTACAAGCCAAGTGCA
TGAAATTGTTGGGCGCATAAATGGACGATTTGGAACATTGACTGCTGTTCCTATTCATCA
TCTGGATCGATCTCTTGATTTCCATGCCTTGTGTGCTCTTTATGCAGTTACTGATGTGGC
TCTTGTAACATCACTGAGAGATGGAATGAATCTTGTAAGCTATGAATATGTTGCATGCCA
GGGATCAAAAAAAGGAGTTCTGATATTGAGTGAGTTTGCCGGTGCAGCACAATCTCTTGG
CGCTGGTGCCATTCTTGTAAATCCCTGGAACATTACAGAAGTTGCAGACTCAATAAAACA
TGCTTTGACAATGACATCTGATGAGAGAGAGAAGCGGCACAGGCATAACTACGCGCATGT
AACAACTCATACCGCCCAAGATTGGGCTGAAACTTTTGTATGTGAGCTAAACGATACAGT
TGCTGAAGCTCTGATGAGAACAAGACAAGTTCCTCCTGATCTTCCTAGTCGAACGGCTAT
CCAGAAATATCTGCAGTCAAAAAATCGTTTGCTCATATTGGGTTTCAATTCAACGTTGAC
CGAGCCAGTTGAATCCTCTGGGAGAAGGGGTGGTGATCAAATCAAGGAGATGGAACTCAA
GTTGCGTCCTGACTTAAAGGGTCCTCTGAGGGCCCTCTGCGAGGACGAGAGCACTACAGT
TATCGTTCTCAGTGGAAGCGACAGGAGTGTGCTTGATGAAAATTTCGGAGAATTTAACTT
GTGGCTGGCAGCAGAGCATGGGATGTTCTTGCGCCCAACTGATGGAGAATGGATGACAAC
AATGCCTGAACATCTGAACATGGATTGGGTTGACAGTGTAAAGCATGTTTTTGAGTACTT
CACAGAAAGAACCCCAAGGTCCCATTTTGAACATCGCGAGACATCATTTGTGTGGAATTA
CAAGTATGCTGATGTTGAGTTTGGGAGGCTCCAAGCAAGAGATATGCTGCAGCACTTGTG
GACCGGTCCAATCTCAAATGCAGCTGTCGATGTTGTTCAAGGGAGCCGGTCAGTTGAAGT
TCGCTCTGTTGGAGTTACAAAGGGTGCTGCAATTGATCGTATTCTAGGAGAGATAGTTCA
CAGCAAAAGCATGGTTACCCCGATTGACTATGTACTATGTATAGGCCACTTCCTTGGAAA
GGACGAGGACATCTATGTGTTTTTCGACCCCGAATACCCTTCTTCTGAATCAAAGGTAAA
ACCGGATGGTGCCTCGGTATCCGTCGACAGGAGGCAGAACGGGCGGCCATCCAATGGCCG
GAGCGGCTCCAGGAACTCGCAGGCCAGGACACCGAAACCTCAGGCTGCGCCGCTGCCGCA
GCCACCGCCGGAGAGGTCATCCTCGTCGTCCGACCACGGCATGGGAAACAACAACAACCA
ACACGACTGGCGCGAAGGGTCCTCGGTGCTGGACCTCAACGGCGACAACTACTTCTCCTG
TGCCGTCGGTAGGAAGCGCTCCAACGCCCGTTACCTGCTCAACTCGTCGGAGGACGTCGT
CTCCTTCCTCAAGGAGATGGCAGAGTCGACGACGCCCCGCGCCGCTGGCCTCCAGCCTGG
CGCCGCCGCTGATTACATGTTCTTGGATAGGCAGTAAGCCAAGTTTCTTTTCTCTACTAA
TCATCACCGGCCCGGCGGCCCACCGGAGAAGAGTTAACAATAGCGCGGAATAACATTTTA
CGCGCGCCGGAGTAGCCGCCGTGGCTGTCTGGCCGGCGCGGCGTGGTGTACAATCCTGTA
CAAAGTATAATTGAGCTCCTGGTATTACTGCGAGAGGTTCTCGCAGCAAACGTGAGGAAG
GCTTTGGCGCTCCTTGACTGTGTGACCTGGAGAGTTTTGTCTTAGATGAAATTGATGGAT
ATTTATCATTGTGATGATTAATCTCAGTATTGACGGTCATTTTTTTTTTTAAAAAAAAAA
AAAAAA

Homology of Contig U35_19417 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g44210.1	860	protein\|trehalose-6-phosphate synthase, putative, expressed
Brachypodium v1_2	Bradi2g19640.1	969
Arabidopsis v10	AT1G78580.1	942	\| Symbols: ATTPS1, TPS1 \| trehalose-6-phosphate synthase \| chr1:29552495-29557482 REVERSE LENGTH=942