barSeed - Barley Seed Development Database

Probe CUST_14471_PI390587928

Source Contig U35_21738

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14471_PI390587928	Hv_44K_v2	TAAAAAACAGCGTCTCTTAAAGAAGAAGCACCGAGTTGACAGCTCCGCTGAACAGATTGC	640	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62611.3	1397	3e-21	646 - 705	97	58 / 60	minus	ABC24149
MLOC	MLOC_62611.2	1739	3e-21	1019 - 1078	97	58 / 60	minus	ABC24149
MLOC	MLOC_62611.1	1802	3e-21	1051 - 1110	97	58 / 60	minus	ABC24149
JLOC1	JLOC1_40988.1	1878	2e-21	691 - 750	97	58 / 60	plus
Harvest35	U35_21738	723	3e-25	641 - 700	100	60 / 60	plus

Contig Sequence (723 bp)

>U35_21738 723 Hv_44K_v2
CCCCACCATCCCCAACCTCGCCCCCGTCCCTGCGCCGCTCCGCAGACGGCGGCCGTGCTT
CCGCTGTCGTGTTGCCGGTTCGCCTCCCCCCCTGAATCTATCAATCCATCCCCATGGCGT
TCTGGGGCGTGGAGGTGAAGCCCGGTAAGCCGTACACCCACAGCTACAACCCTTCCCATG
GCCGTCTCCGCATTTGCCAGGCCACACTGGGCAGTTGTGATGCTGCTACAAGGACAGTGG
TGCAATGCATTGTGGGCAACAAGAAACCCATCATACTTTGTAGTTTGAATCCTAAATTGG
CTGAGATGTGCCATCTCGAGATTGAGTTGGAGGAGGTCGATGAGGTTCTGTTTTCAGTAC
TTGGCCAGAGTTCTGTGCATCTCTCAGGATATTACCTCCGGCCAGGCAGCAGGGGCCATG
CAGGGGACGAAGACTCAGAATCTTATGGAGAGGATGTTGGAGAGTCTGATACAGACCAAG
ACTATGAAGGGAGTGAGGACAGTTATGAATCTGACTTCATTGATGATGGTGACACTGAAG
TACCCGAGCACAATGATGTTTCTAATTCTATGGATGATGGTGATATATGCTCAACCCCCA
ATCATCTTAAGCAAGATTCTGAAAAGCCTGCTCGTAAGGTTAAAAAACAGCGTCTCTTAA
AGAAGAAGCACCGAGTTGACAGCTCCGCTGAACAGATTGCTGATTCTCCATCAAAGCCTG
CTG

Homology of Contig U35_21738 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g12270.1	425	2e-82	protein\|peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed
Brachypodium v1_2	Bradi5g00880.1	401	2e-73
Arabidopsis v10	None