barSeed - Barley Seed Development Database

Probe CUST_14469_PI390587928

Source Contig U35_33711

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14469_PI390587928	Hv_44K_v2	CCACTTGCTTGTACCTTAGGCCTGTATTTTGCTTGTGACGTTTGCTGAAGACCTTGGTTT	4	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19172.1	2278	7e-23	293 - 352	98	59 / 60	minus	ABC03559
MLOC	MLOC_19172.2	2277	7e-23	293 - 352	98	59 / 60	minus	ABC03559
Harvest35	U35_33711	443	3e-25	5 - 64	100	60 / 60	minus

Contig Sequence (443 bp)

>U35_33711 443 Hv_44K_v2
TGGGAAACCAAGGTCTTCAGCAAACGTCACAAGCAAAATACAGGCCTAAGGTACAAGCAA
GTGGCCAATCCAACTGCTTCAGCAATGCTGCATGGTACAATGATGGCTTGTTATCCAGCA
CGGTTGCCCATGCTTGCAACATCATCACTACTCAGAACTCTGACGGCGTGATAACGTCGT
CGATCTTGAGAATCATCTTCACAACCTGCGTCGCCAACAATATCTGTTGTTGCTTGCCAA
TCAGAGTCTCAAAGACGTTCTGTACTCTCATATCATTGGACCCGACATCATTGCAGTCGA
TGCCACAGTAGGGATTGGTCTCCTGAATTTGCTGAGATTTTACTGCAGTCAACGTATCAA
TAGGTGGCAAACCACTGTTTTCAGCCAAGGCTAGTGGAATCCCATCCAACGCATCAGCAA
ACGACCTGATTGCATACTGCTGG

Homology of Contig U35_33711 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g33860.3	460	3e-54
Arabidopsis v10	None