barSeed - Barley Seed Development Database

Probe CUST_14465_PI390587928

Source Contig U35_19423

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14465_PI390587928	Hv_44K_v2	CCATTGGGGAAATTGTACGAGCTGATGGGCCTGAAATATTATGGCCTTTGAGTTAAAAAA	1038	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70394.1	2986	3e-21	2925 - 2978	100	54 / 54	plus	ABC11462 ABC11463
JLOC1	JLOC1_46714.1	3047	2e-21	2888 - 2941	100	54 / 54	plus
Harvest21	ABC11462	632	3e-25	12 - 71	100	60 / 60	minus	ABC11462
Harvest35	U35_19423	1109	3e-25	1039 - 1098	100	60 / 60	plus

Contig Sequence (1109 bp)

>U35_19423 1109 Hv_44K_v2
GGACTGATCGTGCTCGATCTATATATGAGCTTGCTATTGCTCAGCCAGCCCTTGATACGC
CTGAAGTTCTATGGAAGGAGTACTTGCAGTTTGAAATTGACGAAGATGAATTTGATAGAG
CAAGAGAACTGTATGAGAGATTGCTTGATAGAACAAAGCATTTGAAGGTATGGATCAGCT
TTGCTGAATTCGAGGCCTCAGCTGGCTTGGGAGAAGACGATGGAAGTGAGGAGAATAAGA
ATGATGCTGGTTATCAGGAACAGCAGACAGAGCGGGTCCGGAGGTGTCGGGCTGTCTTTG
AAAGGGCATTCGACTACTTCAGGACCAATGCTGCAGAGCTAAAAGAAGAAAGAGCAATGC
TCCTGGAAGAGTGGCTCAAAAAAGAGTTGAGCTTTGGTGATCTTGGTGATGTCACGTTAG
TGCAGAAGAAGGCGCCAAGGAAAGTGAAGAGGAAGAGACCACTCCCCACGGACGATGGCT
CCAATATTGCGTTCGAGGAGTACATCGATTATATCTTCCCTGATGAAGTCACGCTGGCAC
CGAACCTCAAGATATTGGAAGCTGCTTACAAGTGGAAGAAGCAGAAGGCAAACGACACAC
AGGATGACTGATCTGAACATCCAGAGGCCGCCTGTTGTGAATGGTTTCCCACCGTCAGAG
ACGAGTACTACCATGCAAAAATCAGACGTAGAGAAGTTTTCCATTACGCGCGGGTGTAGG
CGTGGAGTTTGCGCTGCCTCTTATACCCTACATATGGCCTTTTTGCAGCTTGTTCAGTGG
AGTTATTGAAGCTGTATTTCTGACGGATGGATGCTGAATTATCTGGGTTCTGTTACCCCT
GGATTGAACGGTATGTTCGTTGTTAGGAGTCAACTTTTATCTTGGTTTTGTTACCCCGGT
TCCTTGGGTTGAATGTAACTCAAACATGTATTATTTGAGCTTAGCACTATATCATGTTTC
TCCCATTTGGTACCTGGTGCTAAACTGCCAGATGAGTGTTTTCCTAACAACGAAACGGAG
CGTCTGCAGTCAGAAATTCCATTGGGGAAATTGTACGAGCTGATGGGCCTGAAATATTAT
GGCCTTTGAGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_19423 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g22260.1	724	2e-101	protein\|crooked neck, putative, expressed
Brachypodium v1_2	Bradi1g38380.1	718	2e-108
Arabidopsis v10	AT5G41770.1	705	3e-64	crooked neck protein, putative / cell cycle protein, putative \| chr5:16718021-16720936 FORWARD LENGTH=705