- Probe CUST_14460_PI390587928
- Source Contig U35_19427
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14460_PI390587928 | Hv_44K_v2 | TTTCAGGAAATGTGCACACATCTTGGCCCTACATCTTGGGAGTAGCTGGGATCTTTATGA | 636 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.172 | 1.535 | 1.493 | 1.191 | 0.738 | 0.625 |
| Raw | 11.690 | 22.488 | 20.113 | 24.575 | 4.235 | 3.956 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK368479 | 2177 | 2e-24 | 957 - 1016 | 100 | 60 / 60 | plus | ABC09647 |
| MLOC | MLOC_20680.5 | 1708 | 2e-24 | 713 - 772 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_20680.6 | 1696 | 2e-24 | 713 - 772 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_20680.1 | 1868 | 2e-24 | 725 - 784 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_20680.2 | 1788 | 2e-24 | 725 - 784 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_20680.8 | 1998 | 2e-24 | 652 - 711 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_20680.4 | 1663 | 2e-24 | 591 - 650 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_20680.7 | 1826 | 2e-24 | 712 - 771 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_20680.9 | 1757 | 2e-24 | 332 - 391 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_20680.10 | 1330 | 2e-24 | 332 - 391 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_20680.3 | 1842 | 2e-24 | 725 - 784 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_14339.5 | 1227 | 8e-25 | 1016 - 1075 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_14339.4 | 2062 | 8e-25 | 1363 - 1422 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_14339.3 | 1715 | 8e-25 | 1016 - 1075 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_14339.2 | 1268 | 8e-25 | 702 - 761 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC11030 | 725 | 3e-25 | 637 - 696 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC27009 | 751 | 2e-22 | 650 - 709 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_19427 | 725 | 3e-25 | 637 - 696 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28249 | 751 | 2e-22 | 650 - 709 | 97 | 58 / 60 | plus |
Contig Sequence (725 bp)
>U35_19427 725 Hv_44K_v2 CACGAGGCAGGTTCCTGGACCTGGCGCGGCTTGGGGCCGTGGCGGAGGGCGCGGCGGAGG CCTTCTTCCGCAGCGAAATACGGCGGCGGCTTGCCGTCACGGCCGTGCTCATCGTGCTCA GCCGCGTCGGCTACTTCGTGCCGCTTCCTGGGTTCGACCGCCGCCTCATCCCCGACTCCT ATCTCAGCTTCGCCCCGCTCCCTGCAGATGACCTCGTTGATTTTGCTTCTGAACTGAAGC TATCATTTTTCCAGCTGGGAATCAGTCATCAGATATCAGCATCGATTGTGATGCAGGTTC TTTGCCATGTTCTTCCATCACTTGAAAAGATTCGCAAGGAAGGATTAGACGGGCATGAGA AGATCAAAAGCTATATATGGTGGCTATCACTGGGTTTTGCAATTGTGGCTGCTTGTACTG TGTCATGCTATTCGCTGCAGTACTCCATATATGCAGCAAGTTACAGGGTTAAGCATGTCA TATTAACAAGCTTTCTGCTTGTCCTCGGTGCAATGTCAACGACTTGGATCTGTGACACCA TAACGGAATCTGGCTTTGGGCATGGCTCATCTTTGATTATCTGTGTTGGAATATTGACTG GTTACACAAATACACTACACAAGATGCTAACTCAATTTTCAGGAAATGTGCACACATCTT GGCCCTACATCTTGGGAGTAGCTGGGATCTTTATGATGGTTACCATGGGGGCAGTGTTGG TGACT
Homology of Contig U35_19427 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os05g33020.1 | 543 | 9e-137 | protein|preprotein translocase subunit secY, putative, expressed |
| Brachypodium v1_2 | Bradi2g26310.1 | 532 | 9e-147 | |
| Arabidopsis v10 | AT2G31530.1 | 575 | 2e-104 | | Symbols: EMB2289, SCY2 | SecY protein transport family protein | chr2:13427060-13430308 FORWARD LENGTH=575 |