barSeed - Barley Seed Development Database

Probe CUST_14459_PI390587928

Source Contig U35_19428

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14459_PI390587928	Hv_44K_v2	TTCAGATCATACTCCCCTTTGGATGGGAATATAAGTTGGGCACTGGTTTTTAGGTTCAAA	1534	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.580	1.465	1.223	0.911	0.389	0.410
Raw	237.252	361.421	254.394	291.003	45.033	51.622

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356030	1526	7e-23	1467 - 1523	100	57 / 57	plus	ABC12798
JLOC1	JLOC1_15659.1	1324	4e-23	1205 - 1261	100	57 / 57	plus
Harvest21	ABC12798	1486	3e-25	1413 - 1472	100	60 / 60	plus	ABC12798
Harvest35	U35_19428	1608	3e-25	1535 - 1594	100	60 / 60	plus

Contig Sequence (1608 bp)

>U35_19428 1608 Hv_44K_v2
AAAGCCACGCGCGCGTCGGCCCGTTCCAGTCATCAACTGACACGGCCCGGCCCGACGACC
CGCGCCACCGAAAACCCACCCAAATCCCCGGCCGCCGCCGCCCGCCCGCACCCCCCGCCG
GTCTTGATGCGCCTCTGCTCCAAGCTCGCCGCGCTGCTCCGGAGGTCCCGCCCGTTTGCG
GCAGCCACCGCCGCCGCGTCCGTCTCCGCGACCGCCACCGCCGCGGCGGCCGCCAACGGC
ATGGAGGAGGCGGCCGCGGGCCCGCTGCGCACCCGCGTGTGCATCATCGGGAGCGGCCCC
GCCGCGCACACGGCGGCCGTCTACGCGGCGCGCGCCGAGCTCAAGCCCGTGCTCTTCGAG
GGCTGGCTCGCCAACGACATCGCGGCGGGCGGGCAGCTCACCACCACCACCGACGTCGAG
AACTTCCCCGGCTTCCCCGACGGCATCCTCGGCATCGACCTCATGGACCGCTGCCGCGCG
CAGTCCGTGCGCTTCGGGACCAAGATCTTCTCCGAGACCGTCACCTCCGTCGACTTCTCC
TCCCGCCCCTTCCGCGTCGCCTCCGACGACACCGTCGTCCACGCCGACTCTGTCGTCGTC
GCCACGGGCGCCGTCGCCCGCCGCCTCCATTTCGCCGGCTCCGACGCGTTCTGGAACCGC
GGGATCTCCGCCTGCGCCGTCTGCGACGGTGCAGCGCCCATCTTCCGGAACAAGCCCATC
GCCGTCGTCGGTGGCGGGGACTCTGCCATGGAGGAGGCCAACTTCCTCACCAAGTACGGC
TCGCGCGTCTACATCATCCACCGCCGCGACGCCTTCCGCGCCTCCAAGATCATGCAGGCC
CGGGCTCTCTCCAACCCCAAAATCCAGGTCGTGTGGGACTCCGAGGTCGTTGAGGCCTAC
GGCGGCTCGGACGGCGGCCCCTTGGCTGGCGTCAAGGTAAAAAACCTGGTGAGCGGCGAG
GTATCCGACGTCCAGGTGGCCGGCCTCTTCTTTGCCATTGGGCACGAGCCAGCGACCAAG
TTTCTCGCCGGACAGCTCGAGCTCGACTCAGAGGGGTACGTGGCCACGAAGCCGGGCTCC
ACGCACACCAGTGTGAAGGGGGTCTTCGCTGCCGGGGACGTTCAAGACAAGAAGTACCGC
CAGGCCATTACTGCCGCAGGATCAGGTTGTATGGCTGCATTGGACGCGGAGCACTACCTG
CAGGAGGTTGGCGCACAGGAAGGGAAGACTGATTGACTATATCTGGTGAAAGCGGCTGGT
AATTCTACGAGAATTTCGTTGGTGCCAAAATCTGCACTCGGAGGCCCAATTGTGACCAAT
CGTAGCAGTTACCCAAAATCAGCAGATTCTTATTGTTTTTAGGCCACAAGTATATGATAC
GCTGTTGAAAAATTTATTCCTGTTGACGGTCAAGTTGTGTTGGCGATTTCACATTCAAAA
TTCCTGACAAAACGAATTTGTGAATCCTGATTACTGTCTGCCGTTCCGACGAAATAGATG
GAAGGAACATTCAAACTCAGGCCAATTCTGTTATTTCAGATCATACTCCCCTTTGGATGG
GAATATAAGTTGGGCACTGGTTTTTAGGTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_19428 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g22140.1	369	0.0	protein\|thioredoxin reductase 2, putative, expressed
Brachypodium v1_2	Bradi1g42580.1	371	0.0
Arabidopsis v10	AT2G17420.1	378	3e-172	\| Symbols: NTRA, ATNTRA, NTR2 \| NADPH-dependent thioredoxin reductase A \| chr2:7564357-7566219 FORWARD LENGTH=378