barSeed - Barley Seed Development Database

Probe CUST_14458_PI390587928

Source Contig U35_19429

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14458_PI390587928	Hv_44K_v2	GATAAAAATGCCACAGGTGCTAGTGCATGTTTGTTGAGTTCTTTTTGTAGAGCTTAAAAA	1646	GeneList: mediumpurple3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.472	3.134	1.291	0.627	0.256	0.333
Raw	127.541	173.190	64.414	52.540	5.989	9.743

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38027.2	3698	3e-22	3358 - 3413	100	56 / 56	plus	ABC11158
MLOC	MLOC_38027.1	2258	3e-22	472 - 527	100	56 / 56	minus	ABC08354 ABC11158
JLOC1	JLOC1_24684.1	2323	1e-22	1779 - 1834	100	56 / 56	plus
Harvest21	ABC11158	1718	3e-25	1647 - 1706	100	60 / 60	plus	ABC11158
Harvest35	U35_19429	1718	3e-25	1647 - 1706	100	60 / 60	plus

Contig Sequence (1718 bp)

>U35_19429 1718 Hv_44K_v2
GTTTTGGGCTTTAAAGAAATCCAGCCAGTAAGTAGCTCGCTTTTCCATCATCGTCGCCAC
CACCTCCCCTTCTTCCCTTTCCCTCCTCGCCGTCGTCCCAGATAGGCAGATTGCTCTGCT
CAGCTCAGTTCAGCTCAGGGTCTCCTCCTCTCCCAAGAGGCCAGGACCATCCGCGCCACT
ATCCCCGCCTGGTTCTTGCTCCGCCGCGCCGTCGCGCGCAGCTGAGGGACAAGAAGCGAG
CAAAAGGAGAAGTGGATCGATTGGTCATTATGCGGCGGTGGTTTTGCTGCGCACATGTTG
ACACACCGTATGAGGAAAATGGGGATGAGTTTCCACACAGTCCTGAAAGGGCAAATGGTA
ATGGTTTTACTCAAATTGGTGATCAGGGAAAAGCACCTCCCTCCATTCAAGTACCTGAAT
TGTCATTTGATGAACTGAAAGAAAAAACAGATGATTTTGGGTCAAAAGCTTTGGTTGGTG
AGGGTTCATACGGAAGAGTGTATTACGCTGTTCTAGAGAACGGGACACATGTGGCTGTGA
AAAAGCTTGATACTTCAGCAGACCCTGAGCCTGACAATGAATTTATCGCGCAGGTCTCCG
TTATTTCTAGATTAAAACATGAACATTTTGTTGACTTGCTTGGGTACTGTCTGGAAGGAG
ATCAACGCTTACTGGCCTACGAATTTGCTACTATGGGCTCTCTACATGATATTTTGCATG
GGAGAAAGGGTGTTGCTGGTGCACAGCCTGGCCCTGCACTTGACTGGATGCAAAGGATCA
ACATTGCTGTTGATGCTGCAAAAGGGCTTGAGTATCTTCACGAGAAGGTCCAGCCTTCTG
TAGTCCATCGAGACATACGGTCGAGCAATGTACTTTTATTTGAGGACTACAAAGCTAAAA
TTGCAGATTTCAACCTTTCAAATCAATCCCCTGATATGGCTGCTCGTCTACATTCGACTC
GTGTGCTTGGAACCTTTGGATATCATGCTCCCGAGTATGCCATGACTGGCCAACTGACGC
AAAAAAGTGATGTGTATAGCTTTGGGGTTGTTCTTTTAGAGCTCCTAACTGGAAGGAAAC
CAGTAGATCACACGATGCCAAGGGGACAGCAGAGTCTTGTTACCTGGGCAACACCAAGGC
TTGGTGAGGACAAGGTAAAACAATGTGTTGATCCAAGATTAAATGGAGAGTACCCTCCAA
AAGGAGTTGCCAAGCTCGCGGCAGTGGCAGCTCTCTGTGTGCAATACGAGTCTGAGTTTA
GACCTAGCATGAGCATTGTAGTCAAAGCATTGTCTCCCCTTCTTATAAATAAACCACAAC
AGCAACCGGGAGCTCCAGACACACCTTCAGATACATGACAACATGTGCAATGCGAGGTTC
ATGTAAAGTGATAGCAATTTTACTTGGTTACCCTGGCAGGTACTGCTTGCCCGTATTTCT
TGTGGTCATCGAGGACTACTGCAGTTAATTTGTTATTTTGTGTCTTTTTCACTCATATAC
TTCGTTTTTTTTGTTCTGTGTTATGTGTTCTTCGGGCAGTACTTGATGCTTCCTTTCACC
TTGTAATTGGGTTTCTCATACTTCGATCTCAGTGGTTAATAATGCCTTTATTCTTTGAGT
TTGAATTCTAGTGTTTATAGAACATAGATAAAAATGCCACAGGTGCTAGTGCATGTTTGT
TGAGTTCTTTTTGTAGAGCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_19429 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os09g33860.1	362	protein\|protein kinase, putative, expressed
Brachypodium v1_2	Bradi3g41740.1	360
Arabidopsis v10	AT3G59350.1	408	Protein kinase superfamily protein \| chr3:21932930-21934883 FORWARD LENGTH=408