barSeed - Barley Seed Development Database

Probe CUST_14441_PI390587928

Source Contig U35_19434

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14441_PI390587928	Hv_44K_v2	ACAGTGATGGTTATTAGCAGACTTGAGTGCATTGTTTTCTTGTTAATTCGACTAGTACTT	785	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.546	1.489	1.278	0.901	0.386	0.428
Raw	99.838	151.300	112.775	126.396	18.512	23.064

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60385.1	3500	2e-24	2 - 61	100	60 / 60	minus	ABC15860 ABC39727
JLOC1	JLOC1_39372.1	3443	8e-25	3383 - 3442	100	60 / 60	plus
Harvest35	U35_19434	881	3e-25	786 - 845	100	60 / 60	plus

Contig Sequence (881 bp)

>U35_19434 881 Hv_44K_v2
GGAGCACGGTGTTCGACTTACTACATGATGGAAGGTCACATGTTCTGGACTGGACATCAC
GGTATAGCATTGCTTTGGGGGTGGCCCAAGGGTTGACCTTTCTTCATGGGCGCACTCAGC
CGGTTCTGCTTCTTGATCTGTCGACGAGGACTATCCACTTGAAGTCAACAAACGAGCCTC
AGATAGGAGATATTGAGCTTTACAAAATTATCGATCCTTCTAAAAGTAGCGGGAGCCTTT
CAACCATTGCTGGCACAGTCGGCTATATTCCACCAGAGTATGCATACACCATGAGGTTGA
CGATGGCTGGCAACGTGTATAGCTTTGGAGTCATTTTACTGGAGCTCTTGACAGGGAAAC
CATCTGTCAGTGATGGCATGGAGCTAGCCAAGTGGGCTCTCAGTCTTTCAGCTAGGCCTG
AGCAAAGGGAGCAGGTCCTTGACACCAGGGTCTCAAGGACTTCAGTTGGTGTTCACAGTC
AGATGCTGTCAGTCCTCAATATTGCGCTCTCCTGTGTTACTTTCTCTCCCGATGCTCGGC
CGAAGATGCGCAACGTCTTAAGGTTGCTCGCCAACGCAAAGTGAATGTGAATCAAAAGAA
AGCAGTCGGTTTTGGTAGGTTAGATAAGTTCTGGATGGAATCTGACATTTTCTTAGTTTG
TGGATGTCAGTATACAGGTGATCATTGTATAGTGACATAGTCTATGGTAGGTTATGAGTT
GGTGACGAGTTTGAATTGTTAAGTGTATATTTTTTGGACTGAACGATCTGTGATCTTTAA
ACACCACAGTGATGGTTATTAGCAGACTTGAGTGCATTGTTTTCTTGTTAATTCGACTAG
TACTTTGAATTGATAACTAGTAATCATGCACGTGCAAAAAA

Homology of Contig U35_19434 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g08180.1	974	2e-104	protein\|receptor-like protein kinase 2 precursor, putative, expressed
Brachypodium v1_2	Bradi4g40990.1	968	1e-114
Arabidopsis v10	AT1G34420.1	966	8e-74	leucine-rich repeat transmembrane protein kinase family protein \| chr1:12584587-12587570 FORWARD LENGTH=966