barSeed - Barley Seed Development Database

Probe CUST_14439_PI390587928

Source Contig U35_33729

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14439_PI390587928	Hv_44K_v2	CATCATCAGTACGATCATCACATCCCTCGACAATACTAAGCCGGATGGTCATATCATCGA	622	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376617	4002	2e-24	1337 - 1396	100	60 / 60	minus	ABC02139
MLOC	MLOC_32003.2	1340	2e-24	1093 - 1152	100	60 / 60	minus	None
MLOC	MLOC_32003.1	1234	2e-24	987 - 1046	100	60 / 60	minus	ABC02139
JLOC1	JLOC1_20947.1	1180	8e-25	941 - 1000	100	60 / 60	minus
Harvest35	U35_33729	756	3e-25	623 - 682	100	60 / 60	plus

Contig Sequence (756 bp)

>U35_33729 756 Hv_44K_v2
TAACGTCTTACTGGACGTCGAAATGAACCCCAAGATCTCAGACTTTGGTCTGTCTAGGGC
TTTTGGTGAAAATCAATCGATGGTTACAACAAGACGTCCTGTCGGTACACTTGGATACAT
GTCTCCGGAGTATGCGTACTACGGCCAAGTCTCTAGCAAGTCAGACATGTACAGCTTCGG
AGTCATGGTTCTGGAGATTGTGACTGGTCGGAGGAGCAATAAATCACTCGAAGTCGAACA
TGATAGTGCCTGCAGATATCTGCCCAGCTATGTATGGGAAAAGTGGAGAGCAGGCTCCAT
GAAAGAGGTGGTCGATCCTTCACTAGGCGGACGTTACCCAGAGAGCGGGGTGCTAAACTG
CGTGCAGATAGGGCTGCTATGTGTTCAGGTGAATCCCAGCGCCAGGCCGGGCGCATCGGA
GGTTGTCCTCATGCTCGACGGTCACTCCACGTCCATGACTATGCAGACTCCCTCCAGGCC
AGCGTTCTGCTTCCCACGACCTGGCATCCTCCACCCGGCGCTCAGTTACCATACTAGGTA
TGCTACGACCAGCGGCCGCTCGAGCAAGTGGAATTGAATTGAACTTACCTAGTGGGAAGA
GCCCAGAAAACTTGGTCCTCGCCATCATCAGTACGATCATCACATCCCTCGACAATACTA
AGCCGGATGGTCATATCATCGANGGAAACTGTATAGATACCGAACTCATAGCAAACTTTG
CGCAGCAAATGGATGCCGTTGGGTTGGGTTCATGCT

Homology of Contig U35_33729 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g12080.1	443	3e-63	protein\|TKL_IRAK_DUF26-lc.7 - DUF26 kinases have homology to DUF26 containing loci, expressed
Brachypodium v1_2	Bradi2g51570.1	699	1e-72
Arabidopsis v10	None