- Probe CUST_14426_PI390587928
- Source Contig U35_21752
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14426_PI390587928 | Hv_44K_v2 | CTGCTGCATGTTTTAGGATAGCAAATCATGCAATATGTATGTTCAGAAAGTTCACGGCTT | 628 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.561 | 1.601 | 1.068 | 0.813 | 0.357 | 0.410 |
| Raw | 1124.130 | 1813.571 | 1054.579 | 1254.599 | 193.079 | 244.173 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_43313.5 | 2371 | 2e-24 | 2223 - 2282 | 100 | 60 / 60 | plus | ABC16631 |
| MLOC | MLOC_43313.7 | 1898 | 2e-24 | 1766 - 1825 | 100 | 60 / 60 | plus | ABC16631 |
| MLOC | MLOC_43313.4 | 2573 | 2e-24 | 2411 - 2470 | 100 | 60 / 60 | plus | ABC16631 |
| MLOC | MLOC_43313.2 | 2548 | 2e-24 | 2288 - 2347 | 100 | 60 / 60 | plus | ABC16631 |
| JLOC1 | JLOC1_27998.3 | 2362 | 8e-25 | 2072 - 2131 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_27998.2 | 2573 | 8e-25 | 2283 - 2342 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_27998.1 | 2852 | 8e-25 | 2562 - 2621 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC16631 | 746 | 3e-25 | 59 - 118 | 100 | 60 / 60 | minus | ABC16631 |
| Harvest35 | U35_21752 | 746 | 3e-25 | 629 - 688 | 100 | 60 / 60 | plus |
Contig Sequence (746 bp)
>U35_21752 746 Hv_44K_v2 GGCACTTAACCATCAGTAATCAGAAAATGAACCCAAGACAACGAGAAGAGCAGAAGAAGG CAGTGTCGACATCACATTGTTCTCAACCCAACACAATAGAATATGATCTGGCCTTGGATT GGATGCTTGTCCGAGAAAAGCAAGCAATGAAGTTCAGTATACTTCATAAGAGGCACGCGG GTGAGAGGAAGTCGTTTGCAGCCAAGATGGCGAAGTAAGTAGCTTCTTTGGAATCGCTTA ACCAATGGGAATGGGAACCGCCAGATGGAGTTGTCAACCATCATCCCTTGGAGCTTGGTG TGTTGTTCACCCGAAGCAACACTTATCATCAAGTTTTTTGTTGCTGCGGCAACCTTATAT GCGCTGATGGTTTATGTTTGGCTTCAACTAATTGAACTCGGAGGAGGCTAACTGCAACGT AGGACGTTCGTTCTTTCTTAAGGAAGTAGATGTATAGGGGTGGGAATTATGAGCACGTTA ACTTCAGGAATCAGAGTAGTGGGAAGTTTCTCATGACATATCTTGAGGAATCGGAGTAGT GCCGTAGAGAAGTAGACCTTGCAGCAAAGCCGGAGGCGGTTTTAGCTTAACTGTAAGCCA GCTTAGTGACGGTGCCCATCTGCTGCCGCTGCTGCATGTTTTAGGATAGCAAATCATGCA ATATGTATGTTCAGAAAGTTCACGGCTTGGCTATCTTTTCTGGTTCATGGTACCGTATTC TTGTATGGCCCAAGTGCAGTGTCCAT
Homology of Contig U35_21752 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |