barSeed - Barley Seed Development Database

Probe CUST_14424_PI390587928

Source Contig U35_21754

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14424_PI390587928	Hv_44K_v2	GTAAGTAGAACATTCTTGGCATTCTCTATGAGAAGTTACTTATATCCACAATCCAAAGCA	1139	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.872	2.005	1.222	0.825	0.274	0.354
Raw	306.023	503.562	267.017	281.642	33.490	46.540

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44532.1	2024	2e-24	5 - 64	100	60 / 60	minus	None
JLOC1	JLOC1_28866.1	911	8e-25	21 - 80	100	60 / 60	minus
Harvest21	ABC52663	485	3e-25	422 - 481	100	60 / 60	plus
Harvest35	U35_21754	1203	3e-25	1140 - 1199	100	60 / 60	plus

Contig Sequence (1203 bp)

>U35_21754 1203 Hv_44K_v2
ATTTTTACTTATTTCTTGAAAGACAATCTCTTCTCTCCGTACTAAGAAGTTGTTTACTCG
CCGCACGCCGCCGCCGTCACCGACACAACAAACGCTGCTCCAAGCAGCGGCTTCACCACG
ACCGGCAGCAATGGCGAGGACGACCAACGGGTGGGCACGCGGGGTGGTGGCGTTCGTGGC
GGTGGCAGTCGCGGTGTCAGCGGGGCGGCGGTACAGCTGGGACGTGGAGGCGGCGGTCGC
GGCGTTCAGGCGCGGGAGGGGCTCCCTGGGGCCCTGGGCGGCACCCGCTTACGTCGCGGC
CCACGCGCTCACGCTCGCGCTATGCCCACCCTACGCCATCTTCTTCGAGGGCGCCGCTGC
GCTCTTCTTCGGGTTCCTCCCTGGCGTTGCCTGCGTCTTCTGCGCCAAAATCCTTGGCGC
GTCGCTCTCCTTCTGGATCGGCAGGGCAATTTTCAAATATTTTGCTTCAGCAATGGAATG
GTTACAAAGAAATAAGTACTTCCATGTTGTGGTTAAAGGTGTGAGAAGGATGGCTGGAAA
TTTGTGTTACTCGCCAGATTCTCTCCACTGCCTTCATACATCATCAACTACGCTCTATCT
GCCACCGATGTTGGATTTTTCAGAGATTTTCTCCTTCCTACAATTGCTGGCTGTTTACCA
ATGATCCTACAGAATGTTTCCATTGTAAGCCTTGCTGGTGCAGCGGTGGCCTCCACTACA
GGATCTAAGAAATCTGTCTATTCTTGTTTGTTACCAATACTTGGAATTGTATCCAGCATT
CTCATTTCTTTGAGGATTAAGCAATACTCTTCTGCCCTTGCAATTCCTGAAGATCTTACA
AACTCACCCACTAATGGAAACATCAATGAGGATGCCAAGCTGCTGTGGCGCAATCTGAAG
ATACCTCTTCCGAGAAAACTAGGAAAAGAAGATGATTTTTAAAGCAGTAGTCAGATTTGA
GCCTTTTTCTGAGAATTATTGTAAGGTAAGACTTGATGGGAGCTACTGTAGATGTTAAAT
TCTAGTTAGAGGGTATGTGGTTGTTTGCGGTTGTCTTGTTGAAGTGTATCCACTTGTACT
GAACTGACACCATATTGTAAAATTTAGACATGTTCTCTGAATCAATTTTGTTTGCTGTTG
TAAGTAGAACATTCTTGGCATTCTCTATGAGAAGTTACTTATATCCACAATCCAAAGCAA
ATT

Homology of Contig U35_21754 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g33100.1	269	1e-68	protein\|SNARE associated Golgi protein, putative, expressed
Brachypodium v1_2	Bradi4g17040.1	270	1e-75
Arabidopsis v10	None