barSeed - Barley Seed Development Database

Probe CUST_14423_PI390587928

Source Contig U35_21755

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14423_PI390587928	Hv_44K_v2	GCGGTCACCTGACTCTTTGTTATTTTCCTAAAAATAAAAATCTCATGCTGACGGACCAGG	604	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.146	1.573	0.961	0.938	0.412	0.452
Raw	1156.748	1274.921	720.767	1092.584	169.237	202.763

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364941	3256	2e-24	659 - 718	100	60 / 60	plus	ABC17540
MLOC	MLOC_7012.2	2927	7e-23	2567 - 2626	98	59 / 60	minus	ABC17540
MLOC	MLOC_7012.3	2966	7e-23	2315 - 2374	98	59 / 60	minus	ABC17540
MLOC	MLOC_7012.1	3307	7e-23	2652 - 2711	98	59 / 60	minus	ABC17540
JLOC1	JLOC1_4619.1	3167	4e-23	598 - 657	98	59 / 60	plus
Harvest35	U35_21755	688	3e-25	605 - 664	100	60 / 60	plus

Contig Sequence (688 bp)

>U35_21755 688 Hv_44K_v2
CTGGAGCCCACACACCATTTTCTCACACATTTTTCCGCTTTTCCTCCATCACAGGAAACG
ACCACGATGGCGTCTTTCTGCCGCTCCGCCGCCGCCGCGGCCAGGTCGGCTGCGCTCCGG
TCCAAGTCCCGGATCGCGAGCCCGTTCCCGGCGACGAGGTCTCCCGTTGCCGCCGCTCCT
CGCCTCCGCAGGTCCGCGGTGAAGATGCTGGCGGGCGCGGAGTCGCTTATGCCGCTCCAC
AGCGCGGTGGCTGGCGCGCGGCTACGGTCGTGCATCGCCGCCGACTCCTCCTGCTGGAGC
TACCTCTCCCAAGACTTTGCTCTTCCTCGGTGACGAAGGCTGAAGAGGTGGGCATCCTAC
TAGGAACAGCACTCAGGATGGATCTTGTTTCCCTGTTAGATGCCCGGCTTGGTGAGTCCA
TGGCTGCAGAGATACTGAACTTTGGTTGGTGACTCGGTGTTCGGGTGCGTTCTTTAACTA
GTAGGGTTTCCTGGTGGCTGAAATGTCCTTTTCTCTGTATCAACTGTTATCTCGTGCCTA
ATCTGAACATGAGTTTCGTTCTTCATGAAGACAAATGGTGAAGTCTCTTCTTCATCCTGA
TCACGCGGTCACCTGACTCTTTGTTATTTTCCTAAAAATAAAAATCTCATGCTGACGGAC
CAGGTTATTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_21755 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None