barSeed - Barley Seed Development Database

Probe CUST_14420_PI390587928

Source Contig U35_21758

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14420_PI390587928	Hv_44K_v2	GAGGGATTTTTCTTGGTTTGGTTTAACCTTTTTCACACTGTATGTGGATTTATTGGAGTA	1003	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.411	1.516	1.497	0.902	0.305	0.359
Raw	929.121	1613.944	1361.368	1281.943	148.468	196.577

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368412	1067	2e-24	982 - 1041	100	60 / 60	plus	None
MLOC	MLOC_18929.1	1186	2e-24	772 - 831	100	60 / 60	plus	None
JLOC1	JLOC1_13115.1	980	8e-25	772 - 831	100	60 / 60	plus
Harvest35	U35_21758	1095	3e-25	1004 - 1063	100	60 / 60	plus

Contig Sequence (1095 bp)

>U35_21758 1095 Hv_44K_v2
CACTTATTGCGCCCGTCTTCTTCGCGTTTCTCCCCCCAGTCTCTTTTACTCCCCCCTTCT
CCTTCCCCAAGCCTTCTCCTTCCCCAAGCCCAGAAGAAGCAGCAGAGGCCAAGAAATGGG
CGACCGGGCGTACGCGCCGGCCTCCAAGCCTGTCCCTGTGGCGGCGCCGCGGTCCGCCAA
CGGCACGGCGAACGGCGGCGGCGTAGGGCCACCTCGGCCTCCGCCCATGGTGCCCGGCCG
CGTCCCGCCCCCGCCGATGTACCGGCCGAAGCCGATGCAACAGCCACCGCGCCGCCGGAG
GAGCGGGCGCGGGTGGTGCTGCGCGTGTTGCCTGTGGCTGACGCTGGTGTTGGTGGGGCT
GGTGTTCCTTGGAGCAATCGCGTTGGGGGTGTTCTACGTGATTTACCACCCGGAGCTTCC
GACCTTCGCCGTGACGTCGCTCCGTCTGGCGGCGCTGAACGTCTCGGACTCCGACTCCGT
CACCTCCCGCATCGAGTTCACGGTGACCGCGCGCAACCCCAACGAGAAGATCGCGTTCGT
GTACGGCGACATCGGGGCTGCCTTCGCGGCCGACGGCACGGACATCGGGGACGGCACCGT
GCCGGGTTTCGTCCATCCAAGTCGCAACACGACGGTCATCAAGGGGGCGGCTTCGGCGGC
CGCCGCGACGGTGGACCCTGTGCAGGCGGCCAGTCTCAGATCCAAGAAGTCTCACGCGAT
GTCAGTGGAGATGGACTCCAAGGTGGGGTTCCAGATCGGGAAGTTCAAGTCGAAGCGCAT
CAACGTCCGTGTGCTGTGCAGCGGCTTCAGCGCGGGGCTGGCCAAGCCGGCGCCCTCCCC
GGCGCCGATCATCGTGGCCGCGGCGCCTGCACCCACCCGGTTTAAGATCAGGCTGTCGTC
GTCTTCCTCCGGAGGCGGCGGGGCGGCGACGACGGACGCAAAGTGTAAGCTGCGCGTCAA
GATCTGGATTTGGACGTTTTGATGCATTTGTGGGTAGGGAGAGGAGGGATTTTTCTTGGT
TTGGTTTAACCTTTTTCACACTGTATGTGGATTTATTGGAGTATAGTTTATATGATTCAA
AAAAAAAAAAAAAAA

Homology of Contig U35_21758 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g39290.1	292	9e-81	protein\|harpin-induced protein 1 domain containing protein, expressed
Brachypodium v1_2	Bradi2g41640.1	291	1e-84
Arabidopsis v10	None