barSeed - Barley Seed Development Database

Probe CUST_1441_PI390587928

Source Contig U35_30020

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1441_PI390587928	Hv_44K_v2	ACGTGGTGCAGGACGAGGGCCTGGTCTTCGTCGTCTCGGACCCCGTCACGGGCGACCGGC	90	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375750	1747	2e-24	395 - 454	100	60 / 60	plus	ABC18358
MLOC	MLOC_53239.1	1738	2e-24	1247 - 1306	100	60 / 60	minus	ABC18358
JLOC1	JLOC1_34183.2	1751	8e-25	435 - 494	100	60 / 60	plus
JLOC1	JLOC1_34183.1	1700	8e-25	435 - 494	100	60 / 60	plus
Harvest21	ABC29659	339	3e-25	91 - 150	100	60 / 60	minus
Harvest35	U35_30020	339	3e-25	91 - 150	100	60 / 60	minus

Contig Sequence (339 bp)

>U35_30020 339 Hv_44K_v2
CTTGGCAGTCGAGATGTTGGCAGCCATCCGCGGCGCAGAACACGGCGGCGGTGCAGATGA
GCCAGTCGATGCCCGGCGCGGGTAGGACGTGCCGGTCGCCCGTGACGGGGTCCGAGACGA
CGAAGACCAGGCCCTCGTCCTGCACCACGTGGATGAGCACGCGGCCGTGGCGACAGTCGA
GGGGAACGGGGTGCTTACCCTGGCCATCGGAGCCCGGGTAGGGGAAGTCTGGCATCGACG
TGGTGGAGGTGAAGCGGGGCGGGGGCGTTTCTTGGAGGACCTGGAACCTTTGGAGGAGGC
CGAGGAGGGGAGGGGCTCCGTGGAAGGCGCGGTATCGGC

Homology of Contig U35_30020 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None