barSeed - Barley Seed Development Database

Probe CUST_14417_PI390587928

Source Contig U35_19440

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14417_PI390587928	Hv_44K_v2	TACCAAATGTACCTGACCTAGAACTGCAGTAGTCAAGTGGAGACCTGTGTTGCTAAAAAA	1259	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.435	1.512	1.031	0.867	0.349	0.395
Raw	6257.403	10346.450	6173.207	8383.723	1154.258	1422.968

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60406.3	679	9e-22	355 - 409	100	55 / 55	plus	None
JLOC1	JLOC1_39388.1	1470	5e-22	1155 - 1209	100	55 / 55	plus
Harvest21	ABC51819	441	2e-22	349 - 403	100	55 / 55	plus
Harvest21	ABC13353	1319	2e-22	1260 - 1314	100	55 / 55	plus
Harvest35	U35_19440	1330	3e-25	1260 - 1319	100	60 / 60	plus

Contig Sequence (1330 bp)

>U35_19440 1330 Hv_44K_v2
TTTTTTTTTTTTTTTTTCCGAAACTCACACTTTATCAATTTGGAAAATACAATAGACCTT
TTAGCTCTTCATTGATGCCCTTTGGATAACAGTCATACATCCTGGCTAAACTAAGCTACA
CTAGTTCTTCGTCACATTAAAAAGATAATAAAGTCCTGTGCCATATTGTGAAACAGGAAA
GTCTGTTGACAATTTTCCAAGTATATACTCTGCAGGACAAATTTCCCTCCCAATACTTAT
TTTTTAGGTGCATCTGTATTGGCGTCGACCTCTGCTTCTGCCTCTTCCTTGGTGCGTACT
TTGATGGACTCTTCAGCATGGAGTGACATGGATTTATATTGATAGTAGTGTGAGCATATA
AGGAAGTAGAAAAGGTTCAGTACTCCAATAACGGTATAAAAAATTGCCGTTTTGTCTGTG
GGAAGGCTGAAGATGTGATGGGGTCTCTTCTCACAGAGTATCTTGGTTCGCCACAGCAGC
ACATTGCAGCTTCTGAAAGTAATTCAGAAGTTAATGCTGCAGGAAAAAAAGAGGATATAG
TTGATGGTGCAGAGAATAATGGTAAAAGTATGGACAGCTTAACAGAGGAAAATGACAATG
GTGAAAGTCAGCAGCTGGGAGACAAATCAGCTAATCATCCCACTTGTTCTAGCAAAGAGT
TGGAAGGTGGACATGAGCAATGCAATGAGGCTGTTCGTAATCAAAACAGCGAGGAAGCAT
CATCATTGGTCAATGATGAGTCCGTTGATGCAAAAGCAGCTGACGGTTCGGAGCACATCA
AAACATCTAATAATGATGTGCTTGCAGCTATTGGATGTCAGTTCAAGAACTTTGTTGCTA
TTGTAGATCCTCCGCGTGCTGGGCTCCACCCTACTGTGATCAAGGTATTGAGAACTCATC
CGCGCATCCGTCGTCTAGTGTACATTTCCTGCAATCCAGACACTCTAGTTGCCAACGCAA
TCGAGCTCTGCACCCCGTCGACCGAGCACAGGGAAAAGAACAAGGGCCACCGTGGATGGC
GAAACATGAGCAGCGCCGGCCTCGCGAGGCAGAGGACCAAGTCGATGCCCAACTCGGAGC
CCTTTGTCCCCAAGAGGGCCATGGCGGTCGACCTGTTTCCCCACACCTCGCACTGCGAGA
TGGTCATGCTCTTCGAGAGGTGAACGAAGCAGCCATTGTTCATTTAATCCTTATCACTTT
AGACATGTTGATCTCCATTGAGGACCTATTAAGAAAAAAAAATCATGCTCATCTTGTTGT
ACCAAATGTACCTGACCTAGAACTGCAGTAGTCAAGTGGAGACCTGTGTTGCTAAAAAAA
AAAAAAAAAA

Homology of Contig U35_19440 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g01480.1	851	2e-106	protein\|zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Brachypodium v1_2	Bradi5g02300.1	709	2e-117
Arabidopsis v10	None