barSeed - Barley Seed Development Database

Probe CUST_14416_PI390587928

Source Contig U35_19441

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14416_PI390587928	Hv_44K_v2	ATACATGTTAATTGCCAGCTGGCGTTGTGAGGCATTTGATTATGCGTGCTTGATAAAAAA	1194	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14781.2	2355	9e-22	23 - 77	100	55 / 55	minus	ABC11312
MLOC	MLOC_14781.3	2534	9e-22	23 - 77	100	55 / 55	minus	ABC11312
MLOC	MLOC_14781.1	5074	9e-22	1710 - 1764	100	55 / 55	minus	ABC11312
JLOC1	JLOC1_10100.2	2943	5e-22	2449 - 2503	100	55 / 55	plus
JLOC1	JLOC1_10100.1	2803	5e-22	2309 - 2363	100	55 / 55	plus
Harvest21	ABC11312	1264	3e-25	11 - 70	100	60 / 60	minus	ABC11312
Harvest35	U35_19441	1264	3e-25	1195 - 1254	100	60 / 60	plus

Contig Sequence (1264 bp)

>U35_19441 1264 Hv_44K_v2
GAAAACATCCATTACGTGGAAACTTAAAAGAGCAGGGACAGCTTCTCCAGCTACACAATC
CGAAATGCTAATCAATTTGGTTCTACTGCTTCAGTCAGTATTCCGTCCCTTATGAACAAT
GCATTGCCACATGTATCACAGCCAGTTCAAGCTATACCAGCAACTAATACTCCGCATGTG
TCTCAGCAAGTTCAGCCTATACAAAGAACCAATCTTTCCAGTCGTACTGTTAAGAAAAAT
GCCCCTCACAGATCTCTCAGTGCGCCAATAGCATCGCAGGGGCAACAAGGTCAGCCGGCA
CCATCTTGTCAGGTCACCTCAAATGGACTGCATGGCGTAGGACCTCAACTTTCCCGGTGC
ACCTCGCTTATGGATCAGAGAAGACAATTCCTGCCAGAACCAGTAATCGATGTTTCCACA
CAAAGCTGGCAAGACATACTTGCTAGTGTGGCATCTGATCTGGGAGTATTAGATGATTCT
GCTTACAATACCAGTACATCACAGTCCCATCAGCCTGTGAGGACTTCCTCCCAACTTCTA
GATGCCGGTACGAACCAAGGGGAGGAGGGTCTTCACGCGGAGTCTGTTGCGTCATCCATA
AACCTGATGACTTCTAATGGGCATGGCTTGCCCATTCATACAACAGGTGGTGGTACCCAG
ACAAATGCTCCTAACCAAACTTTGCATCCTATGGATTATGGTAGCAGTCTTGATCCAGAT
GAAGCTCACCTTGATGGTTTTTTGAGCCCCCCTGCAGATGAATTATTGTTAGAAGCTGCT
CATCAAAGGGACTCTTCCGGATTGGATTCTACAGGCCTTATATTTGACTTTGAGCTCGAC
GAATGGACATAAGAAGCACTCTCAGAGCCAGAGGCTGTCCCGTCTTTTGCATTTGGCGGA
CCTCGTGGATAATAAAACCGGTGATGTTACTACTAGCTGGTCCGTAGGGTTTTCTTCACA
TGAGAGGTGAAGATGTTCCTTGTACAGTAACTAGGTTGTGTGGTGGATATATTTTGTTTA
GATGGGTTGGTTTTTAACCTATCGGTACTACAGGTCTTTTTATTAGAAGGCCTTAGATGG
TAAGTAACCGGTATCGTTCTTTCGTAAGTAGAAGAGCAGAATTTCCACTCCCTAGCTGTT
GGTCATATTTCTATGGGCCATGTTATATTCTAGTGCCAAAAATGCGTGCTTGTGATACAT
GTTAATTGCCAGCTGGCGTTGTGAGGCATTTGATTATGCGTGCTTGATAAAAAAAAAAAA
AAAA

Homology of Contig U35_19441 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g32850.1	554	4e-59	protein\|expressed protein
Brachypodium v1_2	Bradi3g28250.1	571	3e-109
Arabidopsis v10	None