barSeed - Barley Seed Development Database

Probe CUST_14415_PI390587928

Source Contig U35_19442

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14415_PI390587928	Hv_44K_v2	AAGCTGTAAATTGTACATAGATCCAAGTGTATCAATGGAAGAGCTGATTGATCATTTCCG	726	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55641.3	2159	6e-24	1101 - 1159	100	59 / 59	plus	ABC14606
JLOC1	JLOC1_35921.1	1531	3e-24	109 - 167	100	59 / 59	minus
JLOC1	JLOC1_35920.1	1342	3e-24	1176 - 1234	100	59 / 59	plus
Harvest21	ABC14606	616	1e-24	541 - 599	100	59 / 59	plus	ABC14606
Harvest35	U35_19442	803	3e-25	727 - 786	100	60 / 60	plus

Contig Sequence (803 bp)

>U35_19442 803 Hv_44K_v2
GGGTCTACCGTTTTGCCAATGGCCATTGCTACGAAGGCTCCTGCATGAAGGCAAGAAGCA
GGGATTCGGAATGTACACCTTTCGGAATGGCGACAAGCGATCGGGGGAGTGGGACTTTGG
GACTCTAAAGAGCCCCCTGCCTCCCACCGATCCTTCCGTTGAGCGGGCCGTGCAGGTATT
AAACCGCTTTGCTTACACATAAAATTGCCCCCTAGGAGTCTTTACCTGTGCAAATCCTTG
CGGAATTCTAATGGGTCCATTGTATGATCAGGCTGCACAACGGGCCGCGGAGAACGCCTT
CCACCTGCCGAGAGTCGATGAGCAGGTGCACAAGGTGGTCATGGCCGCGAACAGGGCAGC
CACGGCGGCCAGGGTGGCGGCGATCAAGGCAGTCCAGAACAGGATGGACGGGAAATTCTG
CGATACCTATGTGTGAAGAGCGTGTGTGTTGAAGAAAACATGCCCCTTTCTTCTAACTGT
ACATTAGGGTAGTGGAGGACAATAACACTAATCGGTGAGAGTTTCAGACGACGACGACGA
CGAAGACGACCGGGGCGGCACAACCGCTTGCTCCGAGTCAGAGAGAGATCTGATCGGATC
AGCAACAAAGAGGGAGCCTCCGAGGAGGAGCGGAGCTGACAAGTTTTGCATTTCAAAAAC
AGCTCAGATTCTGCGACGATCGCGATCGCGATCGATCGGTGGTCCCTTTCTTTCCCCCCT
TCCAGCAAGCTGTAAATTGTACATAGATCCAAGTGTATCAATGGAAGAGCTGATTGATCA
TTTCCGAAAAAAAAAAAAAAAAA

Homology of Contig U35_19442 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None