barSeed - Barley Seed Development Database

Probe CUST_14413_PI390587928

Source Contig U35_19443

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14413_PI390587928	Hv_44K_v2	ACTGATTGTGCAAAGTCTACTGGTCGGTGTATGAATTATGCCCCCTTTTTGTTTAAAAAA	715	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.385	1.370	1.128	0.889	0.374	0.334
Raw	2057.343	3193.727	2305.047	2860.509	426.262	410.402

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61570.1	1678	9e-22	31 - 85	100	55 / 55	minus	ABC13303
JLOC1	JLOC1_40235.1	1832	5e-22	1548 - 1602	100	55 / 55	plus
JLOC1	JLOC1_40234.1	1680	5e-22	1419 - 1473	100	55 / 55	minus
Harvest21	ABC13303	785	1e-23	716 - 775	98	59 / 60	plus	ABC13303
Harvest35	U35_19443	786	3e-25	716 - 775	100	60 / 60	plus

Contig Sequence (786 bp)

>U35_19443 786 Hv_44K_v2
GGCCAATTGGAGGTACGCTGACCGGCAACGCAGGCTGCTGGAGGATTATGGGTTCCGGTG
TGAGTGTGATCGGTGCCAGATTGAGAGCAAGTGGAAGTTGGATGACGATAATGATGGCGC
TGATGGGGATGACACCATGGAAGATGAGGAGCATGGGAAGGAGGATGCTGAAGACGGTGG
TGATGAGGGGATGGAGCAGGAAGAAGGGAGTGATGACGACGACGATGATTTCCCGCATGC
CTTCTTCTTTGTGAGGTATCTGTGTGATCGGGATGACTGCTACGGCATGCTTGCGCCGCT
GCCACCCTTACCAAACGGTGAGCTGTCCCATGTATTTGAGTGCAATGCCTGTGGGCAACT
GAAGAAGGAAGAAGACGAGGATGAGCCTGATGCTGGTGATTGCAGCATGGACCAGTAGGA
TGTTTGGTGCTGTTTTGGGGGATTACTTGGTGGATGGTGATGAAATGGATGCACTGCTCG
GCCTTCTCCGTACTTTGGGGTTGTTTGCCTTAAAGGAATTGTCTAATGCGCTCCGTGCTT
TGGGGTTGTTTGCCTTAAAGAACTGGTCTAATGCGCCTGAAGTCAGGAAGATGTATGTTG
TACTAAGTACATGATTTCGTTCACTGAATGAGATTTGTAGGCAGCCTTGCTTGGACCTGT
ACAATTTTCAGTATGCCTGTATCTTTGGCGATGTGAACCTGCTGCGGTGTGAGAAACTGA
TTGTGCAAAGTCTACTGGTCGGTGTATGAATTATGCCCCCTTTTTGTTTAAAAAAAAAAA
AAAAAA

Homology of Contig U35_19443 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None