barSeed - Barley Seed Development Database

Probe CUST_14410_PI390587928

Source Contig U35_3374

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14410_PI390587928	Hv_44K_v2	TACTACTGCCTAATCATAGAATACTAGCAGCAAAGAAAAAGGAATAGTGCAACATAGGAA	1468	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361977	3058	2e-24	2393 - 2452	100	60 / 60	plus	ABC15338
MLOC	MLOC_81467.3	1359	2e-24	40 - 99	100	60 / 60	minus	None
MLOC	MLOC_81467.2	1265	2e-24	42 - 101	100	60 / 60	minus	None
MLOC	MLOC_81467.1	1176	2e-24	50 - 109	100	60 / 60	minus	None
JLOC1	JLOC1_54194.2	1175	8e-25	1068 - 1127	100	60 / 60	plus
JLOC1	JLOC1_54194.1	1180	8e-25	1073 - 1132	100	60 / 60	plus
Harvest35	U35_3374	1542	3e-25	1469 - 1528	100	60 / 60	plus

Contig Sequence (1542 bp)

>U35_3374 1542 Hv_44K_v2
AGCGCGTCGGTGAGCGAGCTCTGCTTCGGGGGCGGCGACGGCCTCGGCTGGAAGCCGTGC
CTCTACTACGCGCGCGGGTACTGCAAAAACGGGAGCGCCTGCCGGTTCGTGCACGGCGGC
TTCCCCGACGACCTCGCCGGCGCGAAGATGGACCAGGCCGCCGTGGAGCAACAGTGCCAG
GACTTCCTCCTCCGCTCCAAGTCCCAGCGCCTGGCCGCGGCCGCCGGCTTCGCCTACTCG
CCCACCGGCTCCCTCCCTGGCTCCCCCTCCGCGGCGAGCAAGTGCCTCAGCTTGCTCCTG
CAGCAGCAGCAGCAGCAGCAAAACGACGGCCAAAGGGCCGCGGCCGCGGCTGCCGCAGCG
GCGTTGATGCTGGGCGGCGACGAGGCGCACAAGTTCATGAACCGCCCCCGTCTCGACCGC
GGCGACTTCGCCAGCATGATGAACCCGGGGTCCCGGCAGATTTACCTCACCTTCCCGGCG
GACAGCACCTTCCGCGAGGAGGACGTCTCCAACTACTTCAGCATCTACGGCCCTGTCCAC
GACGTGCGCATCCCCTACCAGCAGAAGCGCATGTTCGGGTTCGTCACCTTCGTCTACCCG
GAGACGGTGAAGCTGATCCTGGCCAAGGGCAACCCGCACTTCATCTGCGACGCGCGCGTG
CTCGTCAAGCCCTACAAGGAGAAGGGAAAGGTCCCCGACAAGTTCAGGAAGCAGCAGGGC
GAGAGAGTGGACTTCTCCAGCTGCGGGTCTCCAACCGGGCTGGACGCCAGAGACCCCTTC
GATCTCCACCAGATTGGTGCGAGGATGCTGCAGCACTCCAACAGCGCCAACGAGATGCTG
CTGAGGAGGAAGCTGGAGGAGCAGCAGCAGGCGGTGGAGCTGCAGCAGGCGATCGAGCTT
CAGAGCCGGCGCCTCATGGGGCTGCAGATGCTCGACCTCAAGACACGCTCGGCCGCGGCT
GCCGCCGCCGCCACCGCGCCGACTCCCATCGCCAAGCCGTTCAGCCCCACCCACACGACT
GCCACCACCCCTACCCTCGAGTCGCCGCCCGATTCCGGGGAGCAAGGCAATGGCTGCGGC
TTCCTTTTTCCTCACAAGAATGCGGTCAACGGAGCTGATAAGGATGAAACCTCAGGCGAT
TCCACCACCAGCCCTAACACTGACAGTGACCAAAGCGCGGAGCATAATCTCCCGGACAGC
CCGTTCGCGTCGCCAACCAAGTCGGGGGCATTCGCCCGTGATGCTTTCGCGCGAACCGAT
GCGGAGATCGCCGCCGCCACCGCTTCGACTGGTTGCAACGCAGCCTACAACGGCAATGGC
ACCAGGAATGGCGGCATTACTAACCATCTCCTGCCCCCTGCATTGGACATACCTTCACCA
AAACCTTACTTCTTCCCCATGTCCAGGCTGTCCTCCGATCACGGCGCGATCGGGATGTAA
AGTAGCGCTGAATGGAAGTGAGTGATACTACTACTGCCTAATCATAGAATACTAGCAGCA
AAGAAAAAGGAATAGTGCAACATAGGAAAAAAAAAAAAAAAG

Homology of Contig U35_3374 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g48410.2	683	0.0	protein\|RNA-binding zinc finger protein, putative, expressed
Brachypodium v1_2	Bradi1g17510.1	700	0.0
Arabidopsis v10	AT3G51950.1	540	3e-67	Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein \| chr3:19278244-19280407 REVERSE LENGTH=540