barSeed - Barley Seed Development Database

Probe CUST_14404_PI390587928

Source Contig U35_3380

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14404_PI390587928	Hv_44K_v2	GTTGGCATCATGCGTATTAGTGTGTATATGTGCTATAATGAACTTTCCTGAATGTGAAAA	1249	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.245	1.425	1.287	0.755	0.452	0.560
Raw	883.064	1605.939	1249.252	942.501	241.449	327.722

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16937.1	1328	7e-23	918 - 974	100	57 / 57	plus	ABC10186
MLOC	AK364984	1387	3e-22	1332 - 1387	100	56 / 56	plus	ABC10186
JLOC1	JLOC1_11693.1	1163	4e-23	918 - 974	100	57 / 57	plus
Harvest21	ABC10186	1360	6e-22	1250 - 1306	98	56 / 57	plus	ABC10186
Harvest35	U35_3380	1360	3e-25	1250 - 1309	100	60 / 60	plus

Contig Sequence (1360 bp)

>U35_3380 1360 Hv_44K_v2
GCGCCCCCCGGGACATGATCCGCGCCCCCTCCTCCCCGGCTGCGCCATCCGCTACTCCTC
CGGGCAGCGGGGGACGCGGCGATCTTGATCTTGCGGCGGGGGTGTCTTCATCGTATCTCG
CGGTTCCGGGTGCTCCATGTCGGCTGGCGACGGCGCGGCGGTGTCGGCCGTGGAGGGGAA
GCTGGCGGAGCTCTCCACCAGCTGCGACCTCAGGACGCTCCCCAAGAGGGGCAAGTCTGC
ATCAGCAAGGACATTAAACACTGCTCAGATTCAGCTTGTCGCAAGCCATCCGGAAGTTTA
CGAACCATGTGATGATTCCTTTGCCCTTGTTGATGCGCTGCTCTCTGACAAAGCCCAACT
TCTGACGCTACAGCCAAGTTTGTGCATGGAAGTAGGATGTGGCAGTGGTTATGTCATCAC
ATCTCTAGCCATCATGCTCAGGCAATTAGGCTCTGGAACCCAGTACCTAGCAACAGACAT
CAACCAACATGCCGTGGAGACAACTCAAGCAACACTTGAAGCCCATGGTGTTCATGCAGA
TGTTATTGCTACTGATATCGTGTCAGGTCTCGAGAAACGTCTGGCTGGCATGGTTGATGT
GGTTGTTGTGAACCCTCCTTATGTGCCAACACCTGAGGAAGAAATCGGGATGAACGGCAT
TGCTTCATCTTGGGCTGGAGGGTTGAATGGGCGCCAAGTGATCGATCGGATTCTCCCTGC
TGTACGCGAGCTGCTATCAGAAAAAGGGTGTCTCTACATGATTGCCCTTGAAGACAACGA
TCCTTTGGGCATATGCCATTTGATGAACGAGAAGGGATTCGCATCGCGTGTTCTGCTGAA
GAGATGTACTGACGAGGAGAGCCTTTATGTTCTCAAGTTCTGGCAAGATGCTGCTGCTGG
TGCAAATGCTTCTCAGTCCGGTAGATCTCCACGCGCCGAGTCGTGGCTTTCGCAGCTGCC
TTTCAAATCCTTTTGGCACAAGAACTCTGGCAGTTCTTGACCTCATCAGTTTGAACCCTC
CCATCCATCATCAAATATATCAAAGCAAGGAAACCTTTGCGAAATTCATATGGCGGTAAT
GTGTAGAAGTGTCTGAATGAGGTCTTCTGTCGAGTTCAGACCTGCCTGTCCTCTGAGAAC
ACGAACCAGACTGACATGGCAAACTTAGCTATGATCCAATGAGCAATCCAGCCTATCGTA
GTTGAAATATACCAAACTTTCCGTGTCGGTAAAACAGCTGTCTTATTATGTTGGCATCAT
GCGTATTAGTGTGTATATGTGCTATAATGAACTTTCCTGAATGTGAAAAAAAAAAAAAAA
TTGTGCCTTCGTTTTGCAGAAAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_3380 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g60920.1	286	4e-161	protein\|Methyltransferase small domain containing protein, expressed
Brachypodium v1_2	Bradi1g03440.1	289	5e-167
Arabidopsis v10	AT3G13440.1	278	2e-75	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr3:4378338-4379347 FORWARD LENGTH=278