barSeed - Barley Seed Development Database

Probe CUST_143_PI415269222

Source Contig TA40134_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_143_PI415269222	Hv_44K_v2	ACAGCACTTCTATTGAGAACTGACATTTTGTTATGTGGATCTATTGTGAGTAGTTGCTGT	1581	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_544.5	1215	2e-24	1143 - 1202	100	60 / 60	plus	ABC14019
MLOC	MLOC_544.3	1806	2e-24	1734 - 1793	100	60 / 60	plus	ABC14019
JLOC1	JLOC1_335.1	1883	8e-25	1747 - 1806	100	60 / 60	plus
Harvest21	ABC14019	1398	3e-25	18 - 77	100	60 / 60	minus	ABC14019
Harvest35	U35_4669	1655	3e-25	1579 - 1638	100	60 / 60	plus

Contig Sequence (1641 bp)

>TA40134_4513 1641 Hv_44K_v2
CCGGTCAAACCCCACGCTCCAAACGCTCCTCGCCCCCTCCGACTCCCCTCGCCTCAAATC
TCACCAGTCACCGTTCCGCCAGTCTCAGCCCCGGCGCCGAGGCGCCGCGCGCAGCCATGG
CCGGCTCCGAGCAGCGCGTCGTCGCCGTCATCATGGTCGGCGGCCCCACCAAAGGGACGA
GGTTCCGGCCGCTGTCGCTCAACGTGCCCAAGCCGCTCTTCCCGCTCGCCGGCCAGCCCA
TGGTGCACCACCACATCTCCGCGTGCCGCCGCATCCCCAAGCTGTCACAGATATACCTCA
TCGGCTTCTACGAGGAGCGGGAGTTCGCCCTCTACGTATCCTCCATCTCCAACGAGCTCA
GGATCCCCGTCAGGTACCTGAGAGAGGATAAGCCGCGCGGGTCAGCCGGAGGGCTCTACA
GCTTCAGGGATTACATCATGGAGGATAGTCCGGCGCACATTGTTTTGCTGAACTGTGACG
TCTGTTCTAGCTTCCCCTTGCCAGACATGCTCGAGGCCCATAAAAAGTATGGAGGAATGG
GCACTTTGCTAGTCAATAAGGTATCTGCGGAATCAGCTAACCAGTTTGGCGAGTTAGTGG
CTGATCCTGAAACAAATGAACTGTTACACTATACAGAAAAACCAGAGACTTTTGTGAGTG
ATCTCATAAATTGCGGAGTCTATATATTTACTCCCAATATACTTAATGCAATCGAGGATG
TCTTGAAACAGAAGAAAGATAGAGCTAATTTGCGCCGTGTATCCAGCTTTGAAGCTCTTC
AGTCCGCAATGAAGGCAATTCCAGCAGATTATGTTAGGTTAGATCAAGATATCTTATCTC
CTCTAGCAGGAAAGAAGGAACTTTACACATACGAGACACTTGATTTTTGGGAACAGATCA
AGACTCCAGGGATGTCTTTGAGATGCTCTGGTCTATATCTCTCCCAGTTTCGCCATACCT
CTCCTCATCTCTTGGCCTCTGGAGATGGCAAAAAGGGTGCCACTATTATAGGTGACGTGT
ACATCCATCCATCTGCAAAGGTTCACCTAACTGCAAAGATTGGCCCCAATGTCTCAATAT
CAGCAAATGCACGCATTGGAGCAGGAGCCAGGCTTATCAATTGCATCATTCTGGATGATG
TTGAAATTATGGAGAATGCAGTTGTTATACATTCAATAGTAGGGTGGAAGTCAACAGTAG
GGAAATGGTCACGTGTACAGGGTGAAGGTGACCACAATGCCAAACTTGGTATCACCATTC
TTGGTGAAGCCGTTGATGTTGAAGATGAGGTAGTTGTAACTAACAGCATCGTGCTCCCAA
ATAAAACTCTCAATGCCAGCGTGCAAGATGAGATCATCCTATAATATCCATTGCACAACA
CATATCTTTATTAAATCCTGAATAAGGTCTTCATACCAAATATGTAATTTTCCTTCTTTT
TCTTCTTCTTTACCCCCCTCATGTATGCTTCCATTAGATTGGGGTCATTAGTCTGTACAA
GGCATGTGATGTGATATTGGTGTAATTTTGTTTAGCATTCTGGCATCAAGTTCACTGGTG
TAGAAATTGTACAAACAGATCACAGCACTTCTATTGAGAACTGACATTTTGTTATGTGGA
TCTATTGTGAGTAGTTGCTGT

Homology of Contig TA40134_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g11050.1	416	protein\|mannose-1-phosphate guanyltransferase, putative, expressed
Brachypodium v1_2	Bradi1g70620.1	416
Arabidopsis v10	AT1G74910.1	415	ADP-glucose pyrophosphorylase family protein \| chr1:28135770-28138456 REVERSE LENGTH=415