- Probe CUST_1438_PI390587928
- Source Contig U35_30023
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1438_PI390587928 | Hv_44K_v2 | GGGAGACTACGTACTCCGAAGCAAAATAAACACTAAATATGTACGCCTATTAATTATTTC | 434 | GeneList: red MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.226 | 2.624 | 1.815 | 0.861 | 0.341 | 0.302 |
| Raw | 155.602 | 518.665 | 310.436 | 229.589 | 31.782 | 31.293 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_29192.1 | 575 | 2e-24 | 357 - 416 | 100 | 60 / 60 | plus | ABC29663 |
| Harvest21 | ABC29663 | 535 | 3e-25 | 435 - 494 | 100 | 60 / 60 | plus | ABC29663 |
| Harvest35 | U35_30023 | 535 | 3e-25 | 435 - 494 | 100 | 60 / 60 | plus |
Contig Sequence (535 bp)
>U35_30023 535 Hv_44K_v2 GGCCGACACGGCCGTGGCCATCGTGCGGAGCCTGGGCGGGCTGGCGCTCCCGCGCGCAGG CCGACCTTCAGCCAGGAGCCCATACGCAGCGAGTCGCATTGCAACTGGTTGATGAACGCC AGATCTAGCGACCAACTGAGTGCCACTGTGCACCGGCCCTGCTGCTCCATCACATGGCAA GGAGGCGGCCATTCCTTCTCCGAGCTCCGCGAGCTGCAATGGTAGCTCCTCTGCCCCCTC CCCGCTCGACCGCGTTGCGTCATTAAGAGCGGAGCGGGTTGATTTCAAGAAACTATAAGG GGTTTCTTGTAAATATGCACGGAAAAACGGTTCAGTGTGCCTTACAGACGGACTGCGGGT TAATTACTTGAAAAGAGAGGTACTTTTCTGCAAAAGAGCCACGACGGACGACAGCGCTCG CGCTTTATTATTAGGGGAGACTACGTACTCCGAAGCAAAATAAACACTAAATATGTACGC CTATTAATTATTTCATTATACTGTATTACATCCATTACAGCCTAAAAAAAAAAAA
Homology of Contig U35_30023 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |