barSeed - Barley Seed Development Database

Probe CUST_14389_PI390587928

Source Contig U35_3395

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14389_PI390587928	Hv_44K_v2	TTTGTGCTTTTTCAAATACGTGTTTCTACGTATGTGAGTTTATCAATGACGTGTAAGGTG	1696	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.163	1.366	1.088	0.919	0.356	0.388
Raw	2057.903	3815.913	2627.180	3539.343	469.347	561.040

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_47662.1	1592	2e-24	1 - 60	100	60 / 60	minus	ABC08194
JLOC1	JLOC1_30703.3	1616	8e-25	1534 - 1593	100	60 / 60	plus
JLOC1	JLOC1_30703.2	1579	8e-25	1497 - 1556	100	60 / 60	plus
JLOC1	JLOC1_30703.1	1608	8e-25	1526 - 1585	100	60 / 60	plus
Harvest21	ABC08194	1787	3e-25	1697 - 1756	100	60 / 60	plus	ABC08194
Harvest35	U35_3395	1816	3e-25	1697 - 1756	100	60 / 60	plus

Contig Sequence (1816 bp)

>U35_3395 1816 Hv_44K_v2
CGCCCCTGCTCCCGCTCCCTCCCTCCCCACCACCCGCAGCTCCCGGCGCCGACAGGGAAC
GATACCCTGCCCCCCGCCCCCCGCCCCCCGCCGCCGCTGCCGCTGCCGCTGCCCATGGAC
TCCACCTCGGATAACTTCGTGGCGCCGGTAGACGAGCGCCAGGACCCGCCACCCCCGAAC
CCTAGCGAGGAGGAGGCGGGCGGCGAGAAGAAAGAGGGGGAGGAGGAGAAAACCCTAGAG
CGGGCGGAGGAGCTGTTTGACAAGGGATCCAAGGCCATCGAGGAGGGGGACTTCGTCGAA
GCCGTCGACTGCCTCAGCCGCGCCCTCGAGATCAGGGTTGAACGTTATGGAGAACTTGCT
TCAGAGTGTGCCAGCACGTATTACAAATATGGATGTGCCTTGCTATACAAATCACAGGAG
GAGACCGATCCTTTGGGTAATGTTCCCAAGAGTGCACCAGATGAAGAACCATCGAAGAGC
ACAGCCAGTAAGGATAGTGGAAACTCAAAGGCATCCAGTAGCAATGTCAAAGGTGATGAT
CCATCTTCAGACAATGGTGGTCTTGAAGGTCAAAACTCAAATGAGAAAGATCAGGAGGAT
GTAGATGGCGACAGTGACAAGGATGGTGATGAGATGGGAGGTGAAGAAGATGATTCTGAT
TTGGATCTAGCCTGGCAAATGTTAGATATTGCAAGGGGTATAGTGGAGAAGAACCCAGAA
AACACTTTGGAGAAAGTGAAAATCTTTTGTGCTCTAGCTGAAGTCTCCATGGAAAGAGAG
GACATAGACAACTCACTTGGTGACTACTTCAAAGCTTTGGCCATCTTGGAGCATTTGGTG
GAGCCTGACCATCGTCGAATTGTTGAACTAAACTTCCGCATCTGTTTGGTCTATGAGTTG
GCATCTAAGATTGGAGAGGCGATCCCATATTGTGCAAAGGCTGTTTCATTGTGCAAGTCA
CGTTTAGAGAGCCTGAAAAATGCGAAGGAAACCTTGTTGGCTGATAAAGCATCTACTGCT
GATGGAGACTCAAAGAAATCATCTGTAGAAGATGAGATGGAGCTTGTTACTGGTATATTG
CCTGACCTTGAGAAGAAGCTTGAAGACCTGGAGCAAGCAATGGAAACCCCAGTGAGCCAG
CTTATGAACATCATTGCTGCAAAAGTAGCGTTTATGGAGAAGGATGGCAATGCCGTGCCA
CCAAGAGCTGCATCTTTGACTTCTTCACAAATGGCTGGAGTAAACAATGGCTTTGACTCC
CCAACAATGTCTACAGCAGCAACATCGGGAAGCACTGGAGGTACTGTTACTGACCTTGGT
GTTGTAGGCAGAGGCATCAAGCGAGCTAATATCAAGCCTATTTCTGCTGAACCGTGTTCA
AAGAGACTGGCAGCAGATGATTCACTGTCTGTGAAAGGCGACAGCAGCAACAACTCAGAT
GTTCACCCCACGCCGCAAGATGGCGAGGGTTCCGTATCAAAGTAGAGTTCATTATCGTTC
GCCTTACATCGCGTTAGTAACTCGCTGGAATCTGTGAGCTGCATATTTGGCACTGTTAAA
CTTGTCAGAGTCATTAAATTGTTTGTGGATTGCGGGAACCATCTTCTCTTAAGTTGTACT
AGTAGCTTGAACTGGTGATAAGTTTATCAAGTGTGACAGTTGGTGAGCTTGTTCATCATG
GATGCGTGTAAGGTGATTTGTGCTTTTTCAAATACGTGTTTCTACGTATGTGAGTTTATC
AATGACGTGTAAGGTGATTTGTGCTTTTCCAAATACGTGTTTCTACATATGTGGTTAACC
AGCGGCCGCTCGAGCA

Homology of Contig U35_3395 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g03070.1	470	3e-142	protein\|tetratricopeptide repeat containing protein, putative, expressed
Brachypodium v1_2	Bradi1g58640.1	463	9e-168
Arabidopsis v10	None