barSeed - Barley Seed Development Database

Probe CUST_14387_PI390587928

Source Contig U35_3397

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14387_PI390587928	Hv_44K_v2	CTCTTCTAACTATAGGCAAAAGTGGATAGAGCTTTCCTTGTACTTCATCTGTATCATGTA	1765	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57388.2	2010	2e-24	177 - 236	100	60 / 60	minus	ABC08267 ABC10838
JLOC1	JLOC1_37184.1	1938	8e-25	107 - 166	100	60 / 60	minus
Harvest21	ABC08267	1876	3e-25	1766 - 1825	100	60 / 60	plus	ABC08267
Harvest35	U35_3397	1876	3e-25	1766 - 1825	100	60 / 60	plus

Contig Sequence (1876 bp)

>U35_3397 1876 Hv_44K_v2
CCCATCTCCCTCCTCCGCCCCGCCGCCAAGGCCAAGCTCCCTCGCCGCGCCATGGCGACA
CCCGCCGCCGTCACCACCTCCTCGCTCTCCCTACTCTTCGCGCACCCCCACTCCCACCAC
CCCTCCACCAAGCAGCGCCTCGACAGGTCCCATCTCCGCCTCCCGCTCCGCGCCGCGCCA
CGCCGCACGCGCTGCGCCGCCGAGGGCGCCTCGGCGTCGACCGCCACCAAGCACCGCCGC
CCCGCGGAGGAGAACATCAGGGAGGAGGCCGCGCGCCTCCGCGGGCCCGCCACGACCTTC
TCGGCGTGGTACGAGCCGTTCCCCCCGGCCTCCGATGGCGACCCCAACGAGCGCTACTCG
CTCGACGAGGTCGTCTACCGCTCCAGCTCCGGCGGCCTCCTAGACGTCCGCCACGACATG
GAGGCGCTCGCGCGCTTCCCGGGCTCCTACTGGCGCGACCTCTTCGACTCCCGCGTCGGC
CGCACCACCTGGCCCTACGGCTCCGGTGTCTGGTCCAAGAAGGAGTTCGTGCTCCCGGAG
ATCGACTCCGACCACATCGTCTCTCTGTTCGAGGGAAACAGCAACCTCTTCTGGGCCGAG
CGCCTCGGCCGCGAGCACCTCGGCGGGATGAACGATCTCTGGGTCAAGCAGTGCGGCATC
TCGCACACGGGCTCCTTCAAGGACCTCGGCATGACGGCGCTCGTCAGCCAGGTCAATCGC
CTCCGCCGGGCTCCGCTCTCGCGCCCCATCAACGGCGTCGGGTGCGCGTCCACTGGCGAC
ACTTCCGCCGCTCTCTCGGCCTACTGTGCCGCCGCGGGCATCCCCGCCATCGTGTTCCTC
CCTGCCGACCGCATCTCGCTGCAGCAGCTCATCCAGCCCATCGCCAACGGCGCCACAGTG
CTCTCGCTTGACACGGATTTCGACGGATGCATGCGGTTAATCAGGGAGGTTACAGCTGAG
CTGCCCATATATCTCGCAAACTCACTCAACTCGCTTCGGCTGGAGGGGCAGAAGACTGCA
GCCATCGAGATATTGCAACAGTTCAATTGGCAGGTACCGGACTGGGTCATTATCCCAGGA
GGCAATCTGGGCAACATTTATGCTTTCTACAAGGGGTTTGAGATGTGCCGTGCTCTTGGG
CTAGTTGATCGTGTTCCACGGCTTGTATGTGCACAGGCCGCCAACGCAAACCCACTGTAC
CGGTATTACAAGTCTGGGTATACTGACTTCCAGTCACTTGTTGCTGGAACTACATTTGCA
TCTGCCATACAGATTGGTGATCCAGTGTCTATTGACCGAGCGGTTGTTGCACTGAAGGCA
ACTGATGGTATTGTCGAGGAAGCTACAGAGGAGGAACTCATGGATGCGACGGCGCTTGCT
GACCTCACTGGGATGTTCGCCTGCCCACACACTGGGGTTGCACTTGCTGCTCTGTTCAAG
CTGCGCGACCAGGGTATAATTGGCACTAACGACCGCACGGTGGTTGTTAGTACAGCACAC
GGGCTAAAGTTCACACAATCAAAGATCGACTACCACGATAAGAACATCAAGGACATGTTG
TGCCAGTATGCCAATCCACCCATCAGTGTGAAGCCTGACTTTGGTTCTGTCATGGATGTT
CTCCAGAAGAAGCTCAATGGTAAGATCTGAGCTTACCTTTTATTAACCTCAAGAGTTCCA
TCTTGTTTATTGTCACAGCGGGTTGTACTTTGGTGACCGTAGTATGGCGATATCATCTTT
ATTTTCCAGTACTAGGTTCTTGAGGCTCTTCTAACTATAGGCAAAAGTGGATAGAGCTTT
CCTTGTACTTCATCTGTATCATGTAATATCAATAATAAGATATGATGTCATGGTTGAATA
AAAAAAAAAAAAAAAA

Homology of Contig U35_3397 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g49890.1	526	protein\|threonine synthase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi2g47240.1	531
Arabidopsis v10	AT4G29840.1	526	\| Symbols: MTO2, TS \| Pyridoxal-5-phosphate-dependent enzyme family protein \| chr4:14599434-14601014 REVERSE LENGTH=526