barSeed - Barley Seed Development Database

Probe CUST_14384_PI390587928

Source Contig U35_20400

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14384_PI390587928	Hv_44K_v2	CGATGTGATTTCACAAGCTTTTCATGTAAATAGAATGTTTCAGTCGACTCTGTTTGCACC	801	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367417	788	2e-24	729 - 788	100	60 / 60	plus	ABC06526 ABC36990 ABC38404
Harvest21	ABC12970	395	3e-25	319 - 378	100	60 / 60	plus
Harvest35	U35_20400	894	3e-25	802 - 861	100	60 / 60	plus

Contig Sequence (894 bp)

>U35_20400 894 Hv_44K_v2
CCAATCCAACGTCCGTCCGCCGCTGAAAACACCCTTCCCAGTCCAAAGCCTTTCCCGCCA
CCTAAAGCACCCGAGGTCACCATCCATCCAATATCCATGTGCGGCGGCGCCATCATCTAC
GACTACATCCCGGCGGCGGCGCACCGCCGCCGGGCGTCCACCGCCGACTTCTGGCCCGAC
GCCTACAGCGCCGCCCCTGACAAAGCGCCGCGCGCGAAGCGGGGGAGGAAGAACCAGTAC
CGCGGCATCCGGCAGCGGCCGTGGGGGAAGTGGGCGGCGGAGATCCGCGACCCCGTCAAG
GGCGTCCGCGTCTGGCTCGGCACCTACCCCACCGCCGAGGCCGCCGCGCGCGCCTACGAC
CGCGCCGCGCGCCGCATCAGGGGCGCCAAGGCCAAGGTCAACTTCCCCAACGAGATCCTC
GCCGGCGCGCCCGCGCACCAGGCGTCGTGCACGATGGCGGCCGCGCCGCCGCCGGCCGCG
CTCCCTTCCCCCAAGAAAGAGGAGGGGGTCGAGCCCGCGGCGCCGTGCTCCTGCGAGGAG
GTGAAGGCGCTGTCCGAGGAGCTGATGGCGTACGAGAGCTACATGAGCTTCCTCGGCGTC
CCCTACATGGAGGGCGGGGCCGCGGCCGCCGTCGGTGCCGCCGCCGAGGAGGCGCCGGCC
GAGCTTTGGAGCTTCGAGGACAGCTACTACTACCCGGGGCCTCTGGGGCTCTGATCATCG
TACCGTGCCCGTGCTGGCCGCGGCGAACTGAGTCAATTCCGTTGAATTCATTTTTTTCAG
TTTTGTAACCGGTGAATGCCCCGATGTGATTTCACAAGCTTTTCATGTAAATAGAATGTT
TCAGTCGACTCTGTTTGCACCAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAA

Homology of Contig U35_20400 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g21120.1	208	2e-59	protein\|AP2 domain containing protein, expressed
Brachypodium v1_2	Bradi2g11890.1	198	1e-56
Arabidopsis v10	None