barSeed - Barley Seed Development Database

Probe CUST_14382_PI390587928

Source Contig U35_20402

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14382_PI390587928	Hv_44K_v2	CTAACACTGGAGAAAGACCAATTTGACCTGTTCAAGATAGCAAGGGCTACCCCAGGATTT	584	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.665	1.223	1.112	0.696	0.420	0.392
Raw	533.309	588.895	480.559	453.183	98.907	103.116

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375673	2825	2e-24	1336 - 1395	100	60 / 60	plus	ABC10327
MLOC	MLOC_44164.1	1899	2e-24	681 - 740	100	60 / 60	plus	ABC10327
MLOC	MLOC_44164.3	1820	2e-24	679 - 738	100	60 / 60	plus	ABC10327
MLOC	MLOC_44164.2	1821	2e-24	681 - 740	100	60 / 60	plus	ABC10327
JLOC1	JLOC1_28596.1	2206	8e-25	681 - 740	100	60 / 60	plus
Harvest21	ABC12881	663	3e-25	585 - 644	100	60 / 60	plus
Harvest35	U35_20402	663	3e-25	585 - 644	100	60 / 60	plus

Contig Sequence (663 bp)

>U35_20402 663 Hv_44K_v2
AGACGGTGATTGACGAGCTGATGATGGAGGTTGTGGTTCCCCTGTGCCACCCGGAGCTGC
CGCTGCGGCTCGGGGTTCGGCCTGTGGCAGGGATTCTGATGCACGGGCCGCCGGGCTGCG
GGAAAACCACGCTCGCCCACGCAATCGCCAACGAGACTGGCGTGCCATTCTACAAGATAT
CGGCGCCGGAAGTCGTATCTGGTGTCTCTGGAGCTTCTGAGGAAAATATCAGAGTCTTGT
TTAAGAAGGCGTACAGAACTGCTCCCTCAATTGTATTTATAGACGAGATAGATGCAATTG
CGTCCAAGAGGGAGAATTTGCAACGTGAAATGGAGCGGCGGATAGTTACACAGTTAATGA
CATGCATGGATGAATTCCACCAGAATGTTGGATCGGATGGTGGTGACTTGGACTCGCAAT
CATCTGAAAAGAAACCTGGCTATGTCATTGTCATCGGAGCTACCAATAGGCCTGATGCTG
TTGACCAAGCGCTTCGGAGACCAGGGAGGTTTGATCGAGAAATATCTCTTGGTGTTCCAG
ATGAGATTGGACGAAAACAGATTTTGAAGATGCTTACTCAGAACCTAACACTGGAGAAAG
ACCAATTTGACCTGTTCAAGATAGCAAGGGCTACCCCAGGATTTGTTGGCGCAGACTTGA
AGG

Homology of Contig U35_20402 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g01980.1	771	8e-118	protein\|AAA family ATPase, putative, expressed
Brachypodium v1_2	Bradi1g51940.2	784	9e-129
Arabidopsis v10	AT3G01610.1	820	2e-82	\| Symbols: CDC48C, emb1354 \| cell division cycle 48C \| chr3:231787-235057 FORWARD LENGTH=820