barSeed - Barley Seed Development Database

Probe CUST_14380_PI390587928

Source Contig U35_20404

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14380_PI390587928	Hv_44K_v2	CCACTGCAATGTAGTATGGCAAAGTTATCAAACTCTGGCTATAATATATACTCATCAAAC	1314	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.704	1.423	1.117	0.917	0.375	0.406
Raw	575.180	755.794	524.028	678.415	96.223	114.075

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374495	1422	2e-24	1347 - 1406	100	60 / 60	plus	ABC09637 ABC13054
MLOC	MLOC_6303.1	1338	2e-24	1260 - 1319	100	60 / 60	plus	ABC09637 ABC13054
JLOC1	JLOC1_4103.1	1289	8e-25	1162 - 1221	100	60 / 60	plus
Harvest21	ABC13054	1294	3e-25	1185 - 1244	100	60 / 60	plus	ABC13054
Harvest35	U35_20404	1424	3e-25	1315 - 1374	100	60 / 60	plus

Contig Sequence (1424 bp)

>U35_20404 1424 Hv_44K_v2
CTTGCTTGCTTCTCCCACCCCCGTCTCCCCCAAATCGGAAGCCTAGGGTTTCCCCCGCCG
ACGAGGCCCTCACCGCCGCCGGCCGCCTCCTCCTCGCCGCAATCCACCCTCCCTCCAAGC
CCTCCCTCACCGCACCCGGCCGGCCGACCCCTTCCCGACCCCTCCTGCGGCGGATCCGGC
AAGCGGCGAGAGCGGGCGGTCTCCTCCGACGCCTTGTCTGGTGCCCGGTTCAGTTTGGTG
ATCACAAATTTTGCACAGTCCTCAGGCTTTGTTGTCCTTAAAGGGTACATCCAAAAATAA
GTCAGCAGCTAGCGAACACCTTAAAGCTGTCTGCTGTTATGGCTTCCATGGCGACCAACG
AGAACCTCCCACCAACTGTCATCAGGCAATTGGCTAAAGAACTGAAGAATCTTGATGATT
CACCTCCAGAAGGGATCAAAGTTATTGTTAATGACGATGATTTCGCCACTATTTTTGCCG
ATATTGAGGGCCCTGCTGGAACTCCATATGAGAATGGAATATTCCGGATGAAGCTAATAT
TATCTCGTGACTTCCCTCAGTCTCCTCCAAAAGGATTTTTCACAACTAAAATTTTCCATC
CAAACATTGCAACTAGTGGTGAGATCTGTGTTAACACATTGAAGAAGGATTGGAATCCTA
GCCTTGGATTAAGGCATGTTCTGCTGGTAGTGAGATGCCTCCTGATTGAGCCATTTCCTG
AATCTGCCCTCAATGAACAAGCTGGGAAGTTGCTACTTGAGAACTATCAGGAGTATGCAC
GGCATGCAAGGCTATATACCAGTATCCATGCTCTCAGACCCAAGAATGGAGCTATCTCGG
CAGCTCTGAATAAGAATCAGTATAACACTCTTCTCGCGCCAATTGCTACCTCTACTGGGA
TAAAGGCATTTGGCCTGAATTCGCAGGATCAGCATGCTGCCCCTTCTGCTGTCTTAGGTG
GAGCATCGGCAGCGCCCAGGAAGGACGGGCCACTGGCCGTGAAAGTCCCCGTCGACAAGA
AGAAGATGGATGCGAGGAAGAAGAGTTTGAAGAGATTATAAGTAAACCAGACTGTCAATG
CTTGTGATATATTTGCTTCTCTTCTGTCCGGGCCCAACCATTGGGCCCTGTTGAGCCGAA
CTGTGGAGGGTGAATAATAATGCGCTGCTGGGCCTCTCCTGGTCCTGCACTTTGCTGGTG
CTGCTGTTCCTGAGCCCGTTTGTGATTTAATGGTTCGATGTAAACTTGAATGGTGGAGAA
CATTTTCTTCCCAATAGGTGGTAGAAATTTTTTGTCCGAAAGACAGAGTTGCAGCCACTG
CAATGTAGTATGGCAAAGTTATCAAACTCTGGCTATAATATATACTCATCAAACTCAAGT
GATTTAAACCTGTTTTTGTTTGCTATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_20404 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g45000.2	253	5e-119	protein\|ubiquitin-conjugating enzyme, putative, expressed
Brachypodium v1_2	Bradi1g31570.2	245	3e-129
Arabidopsis v10	AT5G05080.1	251	1e-92	\| Symbols: UBC22, ATUBC22 \| ubiquitin-conjugating enzyme 22 \| chr5:1498727-1499972 REVERSE LENGTH=251