barSeed - Barley Seed Development Database

Probe CUST_14379_PI390587928

Source Contig U35_20405

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14379_PI390587928	Hv_44K_v2	AAGATGACCAAATTCGAGTGTCCATAAAAGAATGATACACTGGAGTAACACTAGCAAATG	1013	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362105	1920	2e-24	1830 - 1889	100	60 / 60	minus	ABC45375
MLOC	MLOC_55637.1	917	2e-24	44 - 103	100	60 / 60	minus	None
MLOC	MLOC_55636.1	3234	2e-24	2208 - 2267	100	60 / 60	minus	ABC45375
MLOC	MLOC_55636.5	1749	2e-24	1314 - 1373	100	60 / 60	minus	ABC45375
MLOC	MLOC_55636.4	4712	2e-24	1310 - 1369	100	60 / 60	minus	ABC45375
MLOC	MLOC_55636.3	5054	2e-24	1640 - 1699	100	60 / 60	minus	ABC45375
JLOC1	JLOC1_35917.1	2486	8e-25	855 - 914	100	60 / 60	plus
JLOC1	JLOC1_35916.1	2374	8e-25	1786 - 1845	100	60 / 60	minus
Harvest21	ABC12808	1072	1e-24	1014 - 1072	100	59 / 59	plus
Harvest35	U35_20405	1073	3e-25	1014 - 1073	100	60 / 60	plus

Contig Sequence (1073 bp)

>U35_20405 1073 Hv_44K_v2
CCTGCTCCTCCTCCTCCGCCTCCCCTTCGCTCGCCGTCCCGCTCCCGATGGCGGCGGCGG
CGCCGGCGCCGCGCGGCTCTACGAGGGCCGCGTCCGGCACTCGCGCCGGCGCCCGGCGGG
GCACGCCTTCGAGTACGCCGTGCGCTACGCCCTCGTGGACCTCGACCTCCTCCCCCTCCC
CGGCCACTTCTCCGCCGCCGACGCCCGCGTCATCGCCTCCACTTCCGGCCCCGTGCGTCT
CCTGACGGTGCCCAAGAGCGTGGGGTACGAGCAGAACCCACTGAGCGTCTACTACTGCTA
CGACGCAGCGGCGCAAGAACAAGATGAACACCTCAAGATGTGCATTGCTGAAGTCACAAA
TACTCCCTGGGGGGAGAAGGTGATGTTTACCTTCCAACCGGGTTCTGATCTCGTTGCAAA
GCCCTTACATGTCAGCCCCTTCATGGATATGCTTGGCAATTGGAGTATTCGTGCTGATGC
CCCAGGCAATAATCTATACGTGGCTATTGCCGTTCAGCATCCAACACTTGGAAACTATTT
TACTGCAGCTTTGGATGCCAAGTTAGTTGGTCAGACGAATGACTCGGTTAAGCTAGCAAC
ATTCTTCTGGCTGATGCCTCATAAGGTTGCTGCAGGGATATACTGGGAGGCCTTCAGGCT
TTGGCTGAAGAATGTAAGATTCCTAGACCATCCGAGGTACCTGGGCGGGAGCTACAGGGC
TGAAGCTCTGAAGCGCGACCTCGAGATCCGTTCCTCCTGCAGCTTCCTTCATCAGAAACC
GAGAGCAAACATTGGAAGAAACGGCACGACAGCGGTTGATGAGACGACAGAAAACTCGAA
CCATCAGGATTGCAAAGATGGCGGGGGGAGTATCGGCGGGAGGTGGTGCGTCTGGAGGGA
TGCTCGATGGCCATGGTGCTGATGGCAACGCCTGCAGTGAGAAATCATGTGTACAGGAGG
AAATTCCTTCCATGCACGCAATGCAAGAAGTACTTGAGCTGACACCAATATAAAAGATGA
CCAAATTCGAGTGTCCATAAAAGAATGATACACTGGAGTAACACTAGCAAATG

Homology of Contig U35_20405 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g05870.1	325	4e-156	protein\|expressed protein
Brachypodium v1_2	Bradi1g58500.1	325	4e-173
Arabidopsis v10	AT1G30130.1	311	4e-94	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1365 (InterPro:IPR010775); Has 1789 Blast hits to 1789 proteins in 449 species: Archae - 0; Bacteria - 824; Metazoa - 0; Fungi - 6; Plants - 39; Viruses - 0; Other Eukaryotes - 920 (source: NCBI BLink). \| chr1:10587666-10589222 FORWARD LENGTH=311