barSeed - Barley Seed Development Database

Probe CUST_14376_PI390587928

Source Contig U35_20408

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14376_PI390587928	Hv_44K_v2	TCTGGCTGTCAAAGAGCCATCAGTTGGTGTGCATGCAAATAAAACCAAAGCTCAGAATGG	762	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16296.1	1586	2e-24	1106 - 1165	100	60 / 60	minus	ABC19021
MLOC	MLOC_16296.2	2661	2e-24	1104 - 1163	100	60 / 60	minus	ABC19021
JLOC1	JLOC1_11219.1	2020	8e-25	627 - 686	100	60 / 60	plus
Harvest21	ABC12654	823	3e-25	763 - 822	100	60 / 60	plus
Harvest35	U35_20408	823	3e-25	763 - 822	100	60 / 60	plus

Contig Sequence (823 bp)

>U35_20408 823 Hv_44K_v2
TCCAATCCCGCGCCACACTCCTCCCTTCGTCTTCCCCCGCCGCTCCCCGATTCGAAACCC
TAGCAAGGGTTCTACAACCTTCCGGATCGGGAGCGGAGGCCACCGGACGATGGCCGACGG
CGCGCTGCTCGACCTGCTGCCCCAGATCCACGCCCTCTTCTCCGACCAGCTCCGCGTGAT
TTCGTACAAATGGCTAAGCCGGAATTTTTCTGTGTCATCAAATGATGCCAAGAGGTTGCT
TCAGGAGTTTGTCAACAAACATGGAACTGATCACGAAGTTATTTACAGTGTGTCTGGGTG
GTTAAAGAACAATCCCGAGAACTATTGTGTAAAACTCACTTCAGGCCCTAACCTTGAAGA
AGCAAGGCGGACATTTAAAGGTTCTTGTTCAGTTCAGGTTTACAGTATCCAGGCTTGTAT
TCCAAAAGATACTGCTGTACTTTGGAATCCTGAATTTGTGCAGGCAGAGGAGCTTTTCAA
CCAGCCATTTGATGAAGAAAATTGTTTGAGAGATAATAGGTTCTGTGGTGTAAGGAATTC
TTTTGTCAAGCGAACTACCACAGGGAAGCATGTAAGCTCAATGCCCCCAAAGCCTACAAA
TAGTGTTATAGCACCTGCAGTGCCAAAACCTAGTAGTGCTACAAAAGAGCAATCTTCTAT
TGTTCGACAGCAAGATCTACCTGAACCATCCGATCCAGTGAAGGAAACCAGCATTAAAGC
TGAGAAGGATAATGCCTCGGTCTTGGATAAAACTGTTAAGGCTCTGGCTGTCAAAGAGCC
ATCAGTTGGTGTGCATGCAAATAAAACCAAAGCTCAGAATGGG

Homology of Contig U35_20408 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g10690.1	513	7e-122	protein\|POLD3 - Putative DNA polymerase delta complex subunit, expressed
Brachypodium v1_2	Bradi2g06430.1	541	2e-133
Arabidopsis v10	AT1G78650.1	509	3e-55	\| Symbols: POLD3 \| DNA-directed DNA polymerases \| chr1:29582987-29585508 FORWARD LENGTH=509