barSeed - Barley Seed Development Database

Probe CUST_14373_PI390587928

Source Contig U35_20411

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14373_PI390587928	Hv_44K_v2	CCATTACTTCTGTTCTGGGTTCTTCCATATGGTTCAATGCCATTGTTGCTCTCACCCATG	775	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65750.5	4718	2e-24	1761 - 1820	100	60 / 60	minus	ABC06980 ABC49743
MLOC	MLOC_65750.3	4847	2e-24	1823 - 1882	100	60 / 60	minus	ABC06980 ABC49743
MLOC	MLOC_65750.2	4776	2e-24	1831 - 1890	100	60 / 60	minus	ABC06980 ABC49743
MLOC	MLOC_65750.4	3385	2e-24	1761 - 1820	100	60 / 60	minus	ABC06980 ABC49743
MLOC	MLOC_65750.1	3102	2e-24	1955 - 2014	100	60 / 60	minus	ABC06980 ABC49743
JLOC1	JLOC1_43288.2	4821	8e-25	2871 - 2930	100	60 / 60	plus
JLOC1	JLOC1_43288.1	4851	8e-25	2901 - 2960	100	60 / 60	plus
Harvest21	ABC12641	885	3e-25	776 - 835	100	60 / 60	plus
Harvest35	U35_20411	885	3e-25	776 - 835	100	60 / 60	plus

Contig Sequence (885 bp)

>U35_20411 885 Hv_44K_v2
GCTGCCCTACTGAAAGCTGCTACTGGTGCATCCCCGGATGGAAACATCACAGTTTCTTCG
CAAGATGGTTCCAGAATCTTTTCCATGGATAGACCTGCTGGTCTGGGCTCATCAGCCCCA
TCTTTGAGGCCAACTGCCCCCCGCCAACCTGCCCGGTCAAACCTCTTCAGCCCCTCTGAG
CTAGCAGTGACTGCTGAGCCTAATGACGAGATGACAGAGGAAGAGAAGAAATTGCATGAC
AAGGTTGAGTTGATTCGTGTAAAGTTTCTGCGCCTTGTCTATAAATTGGGGGCGACCCCT
GAAGAGACAGTAGCAGCACAAGTGCTGTACCGTCTGAGCCTTGCCGAGGGTATCCGACAT
GGAAGGCAGACAAACAGAGCTTTCAGCCTTGAGAACGCACGGAAGAAAGCCTTGCTGCTT
GAAGCGGAGGGAAAAGAGGATTTGAGCTTCTCCTGCAACATACTTGTCTTGGGGAAGATT
GGAGTTGGCAAAAGTGCAACTATAAATTCTATATTTGGCGAAGTGAAGTCCAAAACTGAT
GCTTTTGGTGCAGCCACCACCAGCGTGCGTGAAATTGTTGGTAATGTGGATGGTGTCAAG
ATTCGGATCATTGATACACCAGGTCTTCGGCCCAATGTGATGGACCAAGGAGCCAACAGG
AAAATTCTCTCATCCGTCAAGAAATATACCAAGAGATGTCCCCCAGATATCGTTCTATAT
GTGGACCGTCTCGATAGTCTGAGCCGTGATCTTAATGATTTGCCTCTTCTAAAAACCATT
ACTTCTGTTCTGGGTTCTTCCATATGGTTCAATGCCATTGTTGCTCTCACCCATGCTGCT
TCTGCTCCTCCTGAAGGCCTCAACGGTGCCCCTATGACATATGAG

Homology of Contig U35_20411 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g05950.1	1307	4e-167	protein\|TOC159, putative, expressed
Brachypodium v1_2	Bradi2g35587.1	1366	1e-168
Arabidopsis v10	AT4G02510.1	1503	2e-95	\| Symbols: TOC159, TOC86, PPI2, TOC160, ATTOC159 \| translocon at the outer envelope membrane of chloroplasts 159 \| chr4:1104766-1109360 FORWARD LENGTH=1503