barSeed - Barley Seed Development Database

Probe CUST_14372_PI390587928

Source Contig U35_20412

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14372_PI390587928	Hv_44K_v2	CTATGATCTGTAAAGGTTTTGGGCGAGGTTCTATCAGTTACACCGATTTTACTGCTCAAA	862	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.370	0.411	0.989	1.451	1.160	1.047
Raw	664.929	1091.022	2434.363	5299.157	1561.617	1531.053

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78036.4	2238	7e-23	1034 - 1090	100	57 / 57	plus	ABC12617 ABC30063
MLOC	MLOC_78036.3	1869	7e-23	1043 - 1099	100	57 / 57	plus	ABC12617 ABC30063
MLOC	MLOC_78036.5	2068	7e-23	864 - 920	100	57 / 57	plus	ABC12617 ABC30063
MLOC	MLOC_78036.2	1875	7e-23	969 - 1025	100	57 / 57	plus	ABC12617 ABC30063
MLOC	MLOC_78036.1	2368	7e-23	966 - 1022	100	57 / 57	plus	ABC12617 ABC30063
JLOC1	JLOC1_52016.2	1187	4e-23	962 - 1018	100	57 / 57	plus
JLOC1	JLOC1_52016.1	1206	4e-23	981 - 1037	100	57 / 57	plus
Harvest21	ABC12617	926	3e-25	853 - 912	100	60 / 60	plus	ABC12617
Harvest35	U35_20412	936	3e-25	863 - 922	100	60 / 60	plus

Contig Sequence (936 bp)

>U35_20412 936 Hv_44K_v2
GCGTCTTCCCCGCTCCGGCCCTGTCTTTCTCTCTCTCCTCAGGCCGCGATGGCACCGTCG
GGGTCGAACCCGCTGGAGCCCGTGTTCCAGACCGTCGCCGCCTTCTCCCGCCGCCTCCTC
ATCGCCCCCGACACCGCACCGGACGACCACCGCCTCCGCCCCCTCCTCTCCCTCTCCCTC
TCCCCGCCTCCTCCCCCGCCCCCGCTGCCGCCGCCGGAGGTCCTCAAGCAGAAGGATGCG
AAGGTGGCGCCCCTGACGAAGGAGGAGGTTGGCCGGGCGACCTGGATGCTGCTCCACACC
ATCGCCGCGCAGTTTCCCGATGAACCAACCAGGCAGCAGAAACGCGATGCGAAAGAGCTG
ATGGCTTTAATTTCGAGAATGTATCCTTGCAAAGAGTGCGCTGATCACTTCAAGGAAGTT
TTGAAAGCAAATCCTGTGCAGGCAGGATCCCAGGCTGAATTCTCTCAGTGGTTATGCTAT
GTGCACAATGTGGTTAATCGAAGCCTTGGAAAAACAATATTTCCCTGCCAGAGAGTAAAT
GCACGGTGGGGCAAGCTGGATTGCCCGGATCGCGCGTGCGACCTAGAAGGCTCCAACGAC
ATCATGCCGAACCGATGACACTGCCCGGAAACCTTATAAAAATTTCCGTGCCAGTAACAA
GTTTAAACCACCATTGGATGGGCAATACCAGGAGGATAAGGAAAGATAATTCAGGACAAT
ACCGGTGTATTATTATTATCGTTTACCTCCTCCATCCTCTATCCCTGGCAAATGTAATAC
TAGTATATGTCATCTGAACCTGCCCCTTGATGCTGCGCTCCTGTACAGTACAGTTTCACC
ATCTTCACGGTGATGAAACACCCTATGATCTGTAAAGGTTTTGGGCGAGGTTCTATCAGT
TACACCGATTTTACTGCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_20412 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g10850.1	195	2e-101	protein\|FAD-linked sulfhydryl oxidase ALR, putative, expressed
Brachypodium v1_2	Bradi1g70790.1	192	2e-109
Arabidopsis v10	AT1G49880.1	191	5e-64	\| Symbols: Erv1 \| Erv1/Alr family protein \| chr1:18464081-18465914 FORWARD LENGTH=191