barSeed - Barley Seed Development Database

Probe CUST_14369_PI390587928

Source Contig U35_20415

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14369_PI390587928	Hv_44K_v2	GTGTAACTGTGTTGCCTGTACGCTATTTATCATAACGGTGGCGTGTGTTGCTACAAAAAA	683	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.289	0.333	0.528	2.473	2.183	2.680
Raw	2.855	6.317	13.027	99.749	29.505	38.322

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62205.1	3629	7e-23	2144 - 2200	100	57 / 57	minus	ABC13118
MLOC	MLOC_62205.2	2936	7e-23	1921 - 1977	100	57 / 57	minus	ABC13118
MLOC	MLOC_62206.1	799	3e-21	704 - 760	98	56 / 57	plus	ABC13118
JLOC1	JLOC1_40688.1	3061	4e-23	866 - 922	100	57 / 57	plus
Harvest21	ABC13118	753	3e-25	684 - 743	100	60 / 60	plus	ABC13118
Harvest35	U35_20415	753	3e-25	684 - 743	100	60 / 60	plus

Contig Sequence (753 bp)

>U35_20415 753 Hv_44K_v2
CAGGGCATCATCCAGTGGCCGGCGAGCTGAACGAGTGCTAGCTTGTTTGTGGTTGAGAGA
TGGAGGCGAGGGTGGGGGCAACGGCGGCGGTGCTCGTGCTGCTGGCGATGGTGCTCGTCC
CGGAGGCGTGCCGGGCGGAGCGGTTCGTCGTCGGCGACGCGGCGCGGTGGACGTGGGGGT
ACAACTACACCGACTGGGTCATCAGGAAGGGACCCTTCTTCCAGGACGACACCCTTGTGT
TCACGTACGACCCGCCGAACGCGACGACGCACGCGCACAGCGTGTACCTGATGCGGAACC
TCGCCGACTACCAGTCGTGCAACATCAAGGCGGGCAAGCTGGTGGCCGGCGTGGCGCAGG
GCTCCGGTGCGGGCTTCGAGTTCGTGCTCAAGAAGCGCAAGATGCACTACTTCGTCTGCG
GCGAGCGCCAAGGCGTCCACTGCACAACCGGCCTCATGAAGTTCGTCGTCAAGCCCAAGA
GCTCCGTCTGCCGCGACGACTGACCGCCCCTTCTCACAGCCCCCCGGTGGTTCCATGGCG
TCCGCGGCCTTCGCCGCCTCCTTCTGCATGCCTCCTCCTCCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTATTCTGTCTCAAATCATTTGTTATACTTGCTGCTTGTAAGTTATCACAATT
GTTGCATTCATATGTGTCGTGTTGTGTAACTGTGTTGCCTGTACGCTATTTATCATAACG
GTGGCGTGTGTTGCTACAAAAAAAAAAAAAAAA

Homology of Contig U35_20415 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g11310.1	150	2e-77	protein\|plastocyanin-like domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g45790.1	148	2e-81
Arabidopsis v10	None